BAC Information

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BAC

Clone NameMSMg01-271I18
Chromosome15 (Build37)
Map Location 46,311,442 - 46,311,735
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039389, EG432951
Downstream geneLOC100039438, LOC665130, LOC100039485
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271I18.T7 (MSMg01no271_i18.b1)MSMg01-271I18.TJ (MSMg01no271_i18.g1)
ACCAG411069AG411070
length752743
length of high quality
(start - end)		314 (39 - 352)647 (71 - 717)
definitionCHROMAT_FILE: MSMg01no271_i18.b1 PHD_FILE: MSMg01no271_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:26 2005CHROMAT_FILE: MSMg01no271_i18.g1 PHD_FILE: MSMg01no271_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTG
ATATACTGGAATATCAAGACTTCACAGGACCAAGGGCCTATCCTCCAAAT
GATGCCCAACAATACCCTCCTCTGCTACGTATGCAGCCAGATCTATGGGT
CCCGCCACGTGTACTCCTTGGTAGGTGATATCCTTCCTGGGAGCTCTGGG
GGATCTGGTTGGTTGATATTGTATTTTTTTTTCCTATGGGGTTGCAAAAA
CCCTCAGCTCCTTTAGTCTTTTCTCTAATTCCTCCACTGGGGACCCAGTG
CTCAGTCCAATGGTTAGCTGCAAGCATCTGCTTTTGTAATTCTCAGGCTC
TTGTATTTCTTCTCACCCCACCCTATATCAGGCTCCTGTCAGCATGCACT
TCTTGGCACCCACAACAGAGACTGGATTTGGTGACTGTATATGAGATGGA
TGCCCAGGGTGGGGAGCAGGGTGGTGGCAGTCTCTTAATGGCCTTTCTTT
CAGTCTCTTCTTCACACTTCGTCTCCATATTTCCTCCTAGGAGTATTTTG
TTCCCCATTCTAAGAACTGAAGCATCTACACTTTTGTCTTCCTTCTTGAG
CTTCATGTCATTTGTGAATTGTATCTTGGGTATTCTGAGCTTTTGTTCTA
ATACCCACTTATCAGTGAGTGGATACCATGTGTGTTCTTTTGCGAATACG
TTACCTCACCTCACTCCTGATGATATTTTCCAGTTCCATCCCTTTGCCTT
AG

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATAGAAAGAATTAATTTATAGGTATAAGAA
TGTAGAAATTTTATACAATACAGACAGAATTACATATTCACATGAACAGA
AAGATATAGAGAATGAATAAAATCTTAAAATCGATATGAGGGAACAACAT
GTCATAGAACAGTAAATGGGGAATGTTGATGGATGGATCAAGGTGATTTT
GTATAAAATATACCATGTAGAATCATTTTCAGTAGTGAAATATCATTCTC
AGTCTGGAAGAGCCTTAAAGAAACCCAGGAGCATCCTTCCTCCCCCTGGA
AACATTCAGGCAACCCAAAACTAACCATCTTGAAACCCTGCCTGACCAGC
CATCCTAGTAGAATCTACCTGCCACCAGAGCAGGTCTGCCTGAAGAGGTG
AGTGTTTCATGCTCGGTCCCCCAGCTCCATTGTCTAGCTCTGGCCTTGCT
CCTTGGTCACAAGCTTTGTAGTACTCCAAGAATGTCCTGCTTCTGACCCA
GTGGAAAACTTTGAGGGCCCCAAAACTAATCAGATTAGAAAACAATCTGA
CCACCCATAGTAATTGGATCTATCTGCCATTCTACCTGGATCTGAAAGAA
AGACAGTCTACAGAGTAGGGTCCTCCTGTGACATAGCCTGCGGAAGAGGG
TTTGTCTGAGACACAATGAAGAGAGTAGGGTACTATGACTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_i18.g1 MSMg01no271_i18.g1 CHROMAT_FILE:
MSMg01no271_i18.g1 PHD_FILE: MSMg01no271_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:26 2005
         (647 letters)



>mm_chr15_46311239_46312281
          Length = 1043

 Score =  476 bits (246), Expect = e-138
 Identities = 284/298 (95%), Gaps = 4/298 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaaagaattaatttataggtataagaatgtagaaattttatacaatacagacagaattac 63
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 204 gaaagaattaatttataggtataagaatgtagaaattttatacaataaagacagaattac 263

                                                                       
Query: 64  atattcacatgaacagaaagatatagagaatgaataaaatcttaaaatcgatatgaggga 123
           |||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||| 
Sbjct: 264 atattcacatgaacagaaagatatagaggatgaataaaatcttaaaatcaatataaggg- 322

                                                                       
Query: 124 acaacatgtcatagaacagtaaatggggaatgttgatggatggatcaaggtgattttgta 183
             ||||||| |||||||||||||||||||| || ||| ||||||||||| ||||||||||
Sbjct: 323 --aacatgttatagaacagtaaatggggaaagtagatagatggatcaagatgattttgta 380

                                                                       
Query: 184 taaaatataccatgtagaatcattttcagtagtgaaatatcattctcagtctggaagagc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaatataccatgtagaatcattttcagtagtgaaatatcattctcagtctggaagagc 440

                                                                     
Query: 244 cttaaagaaacccaggagcatccttcctccccctggaaacattcaggcaacccaaaac 301
           ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 441 cttaaaggaacccaggagcatccttcctccccctggaaacatt-aggcaacccaaaac 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1043
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1033
Effective search space:   658021
Effective search space used:   658021
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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