BAC Information

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BAC

Clone NameMSMg01-273E05
Chromosome15 (Build37)
Map Location 64,624,171 - 64,624,478
singlet/doubletsinglet
Overlap geneAdcy8
Upstream geneMlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik, Ddef1
Downstream geneLOC268812, LOC100040790, LOC665836, C920006C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-273E05.T7 (MSMg01no273_e05.b1)MSMg01-273E05.TJ (MSMg01no273_e05.g1)
ACCAG412315AG412316
length741741
length of high quality
(start - end)		313 (37 - 349)293 (67 - 359)
definitionCHROMAT_FILE: MSMg01no273_e05.b1 PHD_FILE: MSMg01no273_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:36 2005CHROMAT_FILE: MSMg01no273_e05.g1 PHD_FILE: MSMg01no273_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:12:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATA
ACCAAACTTGCAGATATGACATGAAGTTCAACCTGGAACAATATACTTCT
TATGACTCCTTTTCATCATTTGTATAGTGCTGATAATGGCACAAAGTCAC
TGTGAAGATTCAGCAAAGCCCTCAGCAAATGGAGCTCACCTCCATAATGA
GCTTCCTTCCATTCCTTTCTCTCCTCTGGAGAGTTAATAGCACTGTTTCT
CCCAGGTGTCTGGAGTATAGTCAGATAATCAGATCTTACCTCGATGTGTA
GCTCTGTCCAGTTGACCGTTTACCTAGGTTGCTTGACGCTCTTCTCAAGC
TTGTATGNATATCGCCCCATCACTTTAGCAGGAAGGAGTAACTAGAGTCG
TCAGCTACAACTTTGTATAGAACAGATTATAAATATATAATTAAAAGCTG
TTACCATTTAGAGAAATTATTAGTAGTTAATGCTAAGTGCGCAGCAGGAA
CTTGGCTCAGCATTTCTTTGCATGATCTTATGAACTATCTTCACAGCCCT
GCAGAGTCTCATCCTCCTTTCCCTTACATCTGTCGAAACAAACTCAGAAA
TTAGTGGCACTATCCTAAGACCTATAGCTACTAAATGGAAGCTCCCAACT
TCAGCTTCAGTGCACATTCCGTGCCTCTCAGCGGGACTAAGCAAGCACAT
GTGCTGAAGGAACTTCAATGTCTACGCCAATCCCAAGGAGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAACCCCATTTTTTAATGGGG
TTATTTGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATATTGGA
TATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTG
TTGGTGGTCTTTTTATCTTATTGACAGTGTCTTTTGCCTTGCAGAATCTT
TGCAGTTTCATGAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGC
CATTGCTGTTCTATTCAGGAATTTTTCCCCTGTGTCCATATCTTCGAGGC
TTTTTTTTTTTTTCTCCTCCCCCCGTTTCAGACTTCTTAGAATTGGAAAC
AATCACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACAAAA
GGATGGACCATCTAGAGACTGCCATATCCAGGGATCCATCCCATAATTAG
CCTCCAAATGATGACACCATTGCATACACTAGCAAGCGTTTGCTGAAAGG
ACCCTGATATAGCTGTCTCTTGTGAGACTAGGCCGGGGCCTAGCAAACAC
AGAAGTGGATGCTCACAGTCAACTATTGGATGGATCACAGGGCCCCCAAT
AGAGGAGCTAGAGAAAGATCCAAGGAGCTAAAGAGATCTGCAATCCTGTA
GGTGCAACAACATTATGAACTAACCTGTACCCTGGAGCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no273_e05.b1 MSMg01no273_e05.b1 CHROMAT_FILE:
MSMg01no273_e05.b1 PHD_FILE: MSMg01no273_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:12:36 2005
         (313 letters)



>mm_chr15_64623968_64624680
          Length = 713

 Score =  572 bits (296), Expect = e-168
 Identities = 305/308 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctataaccaaacttgcagatatgacatgaagttcaacctggaacaatatacttc 63
           |||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||
Sbjct: 511 ggaattctataaccaaacttgcagatatgacatgaatttcaacctcgcacaatatacttc 452

                                                                       
Query: 64  ttatgactccttttcatcatttgtatagtgctgataatggcacaaagtcactgtgaagat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttatgactccttttcatcatttgtatagtgctgataatggcacaaagtcactgtgaagat 392

                                                                       
Query: 124 tcagcaaagccctcagcaaatggagctcacctccataatgagcttccttccattcctttc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tcagcaaagccctcagcaaatggagctcacctccataatgagcttccttccattcctttc 332

                                                                       
Query: 184 tctcctctggagagttaatagcactgtttctcccaggtgtctggagtatagtcagataat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tctcctctggagagttaatagcactgtttctcccaggtgtctggagtatagtcagataat 272

                                                                       
Query: 244 cagatcttacctcgatgtgtagctctgtccagttgaccgtttacctaggttgcttgacgc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cagatcttacctcgatgtgtagctctgtccagttgaccgtttacctaggttgcttgacgc 212

                   
Query: 304 tcttctca 311
           ||||||||
Sbjct: 211 tcttctca 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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