BAC Information

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BAC

Clone NameMSMg01-274B09
Chromosome15 (Build37)
Map Location 26,850,396 - 26,850,646
singlet/doubletsinglet
Overlap genenone
Upstream gene1810015C04Rik, Zfp622, AK162044, Fbxl7, LOC622531
Downstream geneLOC625311, Ank, BC087945, LOC100040622, BC052328, Trio
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274B09.T7 (MSMg01no274_b09.b1)MSMg01-274B09.TJ (MSMg01no274_b09.g1)
ACCAG412913AG412914
length749742
length of high quality
(start - end)
235 (126 - 360)236 (122 - 357)
definitionCHROMAT_FILE: MSMg01no274_b09.b1 PHD_FILE: MSMg01no274_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:34 2005CHROMAT_FILE: MSMg01no274_b09.g1 PHD_FILE: MSMg01no274_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAGGCCAGTTCCTATATACAGAGTAATCCTGCCCCAAACCTAACTGAAAA
TTCACAAGAAAGAATATTCCCCATGGTCACTATTGAAACCAAATACATAC
CATCACCAAATATGGACTCAGCATGTTGTGTATTCATACATACACACATA
CTCATGTATGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTGTATGCATGTATATGTATGTGTGTTTGTCCATATACATACATACTTA
CATTCACATACACACACACACACTCACACACACACTCACACACACACCAC
ACACACACATTTTTGTTCACTCGCACACACACACAGAGTTTACAATAATA
ATCAAAGATAAAGAGGCTATCAACTTGATATGCGGAGTACATTAGAGTGA
TCTAATACACAGGAAGGACTGGAACAAGGAACGAGAAGGCTCATGTGAAT
ATTCTATCTCAATGAAAACTATTACAAAATGAAATAATTATTTGAAAAAA
AATTAAAAACAAGTACCGAAAGGATTAATGAAAATGAGAGGCATGAACAC
ACAAACGATTGTATGGGATAGGAACAGACAAATGATGCATGGTAGGATCG
AATGAACGAAGCGATGATGGAAGGAAGGATTGAATACCCTGTATTGAATG
TACACATATTTTTTTTGTAAACATCACCATAGTATCGCGTAATACATTN
GTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACAGTTGGGAGCTAATTTGGTGGTTCTTCTTCT
TCTTCTTCTTCTTCTCCCCCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTC
TTCCTCCACTTCTTTTTCCTTGTCTTTTTTTTTTAAGTAAATGCTATCTA
ATGGAGAGGCCCTAAACCAAACCTAACCAGAAAGTTGTAGAAATAAGTGT
ACCTCAAGGCCAGATTCTCTCAGAAGAGAATAAAGACAAACTCAGTTTAA
ATGAAAACCAATTCAGAAAATAAATGATTTGTAAGTAAAACGATGCTAAA
TCAAATATTTATTTTGACCCACCCCTCATTTTATTTTTCTTTTTACTTAA
AAATATGTATTTATCTTTATTTTAAGAAAACATGTGTGTGCCTGCATGCA
TGCGGTAAGGGTAAGTGCTCTTAACTGCATGACCTCCAATTTTCTCTTTT
AAGAAGCATTTTACAGTTAGCTGGATTTCACATTAGCTTGCCTTCTATTG
CTGATACTAGACACTGACAAAAGGTGTTGAAGGTAGCACAGACAGTAGCT
AATTATAAACTCCGAGGTTTAGATGTTGCTATCTCTCTGTTAATAATGAT
CTTCTATGAGCCAAATAGAAAAATTCTTGAAGCGGAGATATCTTTGAAAA
TTGGAAGGGACCAAAGGAGATTCTTTCTCTCTGGGATCTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_b09.g1 MSMg01no274_b09.g1 CHROMAT_FILE:
MSMg01no274_b09.g1 PHD_FILE: MSMg01no274_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:35 2005
         (236 letters)



>mm_chr15_26850133_26850768
          Length = 636

 Score =  393 bits (203), Expect = e-114
 Identities = 233/251 (92%), Gaps = 15/251 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttcttcttcttcttcctcttcttcttcttc-----------ct-ccacttctttttcc 48
           ||||||||||||||||| ||||||||||||||           || | ||||||||||||
Sbjct: 514 tcttcttcttcttcttcttcttcttcttcttctactactactactactacttctttttcc 455

                                                                       
Query: 49  ttgtctttttttttt---aagtaaatgctatctaatggagaggccctaaaccaaacctaa 105
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 ttgtcttttttttttttaaagtaaatgctatctaatggagaggccctaaaccaaacctaa 395

                                                                       
Query: 106 ccagaaagttgtagaaataagtgtacctcaaggccagattctctcagaagagaataaaga 165
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 394 ccagaaagttgtagaaataagtgtacctcaaggccaaattctctcagaagagaataaaga 335

                                                                       
Query: 166 caaactcagtttaaatgaaaaccaattcagaaaataaatgatttgtaagtaaaacgatgc 225
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 caaactcagtttaaatgaaaaccaattcagaaaataaatgatttgtaagtaaaacgatgc 275

                      
Query: 226 taaatcaaata 236
           |||||||||||
Sbjct: 274 taaatcaaata 264


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)