BAC Information

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BAC

Clone NameMSMg01-274D03
Chromosome15 (Build37)
Map Location 10,153,797 - 10,275,518
singlet/doubletdoublet
Overlap genePrlr
Upstream geneLOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r, C230086A09Rik
Downstream geneAgxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14, C1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-274D03.T7 (MSMg01no274_d03.b1)MSMg01-274D03.TJ (MSMg01no274_d03.g1)
ACCAG412996AG412997
length734732
length of high quality
(start - end)
489 (71 - 559)226 (129 - 354)
definitionCHROMAT_FILE: MSMg01no274_d03.b1 PHD_FILE: MSMg01no274_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:42 2005CHROMAT_FILE: MSMg01no274_d03.g1 PHD_FILE: MSMg01no274_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:13:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,275,033 - 10,275,518)(10,153,797 - 10,154,021)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATT
CAACAAGGAGTTTCAAAATAGAAAGACAAATTGAAATTTCAGCAGTGAAA
ATATTCATAAATCACATAAAAACTCAGTTGTTGGGATCTTCACCAGGGAA
GTCAACTGGAGAATAGAACACCAGAGCTGAAAGACAGACAGATATAAATG
TTCAGATGATAATAAGGAAAATGAAGGAAGTAAAAATAGAGACTGCACGA
GTTCCCAGCCACCATTCAAAGTCTGAATGTGTGGGTCATAGAGAGAGAAG
AAGGAGACGAGGGGAGCAGGTGCATACTAAAGAAGCAGGAAACATTTTAA
AGAAAATGACAGAAGAGAGTTCCTCAAATCTTGGATAGGACATGGGCATC
TAGGTAGGAGAGGCTATGAGAATCCGGGACACGTGGATTTATATGCAAAA
CTGCTCTCTCCTGAAGCCTTCCATAGTCTTTTCTCAGTCTCTGCCTTTAG
TGATTTGACCATAATTCAACACGGTTCTTCTGCTCATCTTTATTTCTGGT
TCTTTCTCAACCTTGAGATTATAGGAAAGACCGAATCTCATTAGAATAGT
TTACAATGTATAGAGAAAGGGGTTAAATATCTTGAAATAATCTTTTAATG
GCTGGAATTAGCATGTATTCTTCCATCGTAATCTCGGATGTCAATGGCGT
CTTGTTTCTATTTAATGATTTCGACTAGTGCATT
ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTAGGGAAACGTAGAAGAGCAATCATCCAG
AGAGGGGCTCTGATATTTTCTCCCTGGACACTGTCTGCTCTTTTCAGAAG
TCTGGACTCCCTGACCTCCAAGGCCTCCTCAAGGTATGGAGTTCTCTCCC
TCTTGAATGTTTCTATCTCCTTTCACTGATGCTCAGGGAGACTTGTGACT
TGAGCTGGAAAATACTGCTCTGGGAGGGAAGAACGGTCTGTTGTCCTAAA
GCAGTGTGACCTTGGAAATGTATCTAATCTTTTCTGGACTCCATGCCTTT
CTTCGTTTTCTGTTTTTCTTGCACCTCTGCCCATCATGGTCTCTTCTGTT
TGAAATGTACCTTACAAACCTAACCCAAAAAAGTGTCTGAAGAAACTAAT
GCTGAATTGATAGATTTCATTATTGTCATGAAACTACTCTATTACAGGTC
CGCTACATACAACTTGAAGATCTTCCTTCTCACCAACAATCAACTCTACA
AATGCCCTTGGTGTCAGAAGCCTATTTTTGTTCCTCCTGCATAACCTCTG
TATTACAGTCTTCTATCTGCTTCCCACTTGTGCCTACTGTTTTCCCCTTT
GCCTTCCTGCTGCTCAATTATCACGCCTACCCTTACATGCCAGAACCCTT
TCCTGCCACCTCCATTTACTTTTCCCGCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no274_d03.b1 MSMg01no274_d03.b1 CHROMAT_FILE:
MSMg01no274_d03.b1 PHD_FILE: MSMg01no274_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:42 2005
         (489 letters)



>mm_chr15_10274833_10275721
          Length = 889

 Score =  901 bits (466), Expect = 0.0
 Identities = 481/486 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaagacaaattgaaatttcagcagtgaaaatattcataaatcacataaaaactcagttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 gaaagacaaattgaaatttcagcagtgaaaatattcataaatcacataaaaactcagttg 627

                                                                       
Query: 61  ttgggatcttcaccagggaagtcaactggagaatagaacaccagagctgaaagacagaca 120
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 626 ttggaatcttcaccagggaagtcaactggagaatagaacaccagagctgaaagacagaaa 567

                                                                       
Query: 121 gatataaatgttcagatgataataaggaaaatgaaggaagtaaaaatagagactgcacga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gatataaatgttcagatgataataaggaaaatgaaggaagtaaaaatagagactgcacga 507

                                                                       
Query: 181 gttcccagccaccattcaaagtctgaatgtgtgggtcatagagagagaagaaggagacga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gttcccagccaccattcaaagtctgaatgtgtgggtcatagagagagaagaaggagacga 447

                                                                       
Query: 241 ggggagcaggtgcatactaaagaagcaggaaacattttaaagaaaatgacagaagagagt 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ggggagcaggtgcaaactaaagaagcaggaaacattttaaagaaaatgacagaagagagt 387

                                                                       
Query: 301 tcctcaaatcttggataggacatgggcatctaggtaggagaggctatgagaatccgggac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tcctcaaatcttggataggacatgggcatctaggtaggagaggctatgagaatccgggac 327

                                                                       
Query: 361 acgtggatttatatgcaaaactgctctctcctgaagccttccatagtcttttctcagtct 420
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acgtggatttatatgtaaaactgctctctcctgaagccttccatagtcttttctcagtct 267

                                                                       
Query: 421 ctgcctttagtgatttgaccataattcaacacggttcttctgctcatctttatttctggt 480
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ctgtctttagtgatttgaccataattcaacacggttcttctgctcatctttatttctggt 207

                 
Query: 481 tctttc 486
           ||||||
Sbjct: 206 tctttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no274_d03.g1 MSMg01no274_d03.g1 CHROMAT_FILE:
MSMg01no274_d03.g1 PHD_FILE: MSMg01no274_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:13:42 2005
         (226 letters)



>mm_chr15_10153597_10154222
          Length = 626

 Score =  397 bits (205), Expect = e-115
 Identities = 220/225 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactgtctgctcttttcagaagtctggactccctgacctccaaggcctcctcaaggtatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactgtctgctcttttcagaagtctggactccctgacctccaaggcctcctcaaggtatg 260

                                                                       
Query: 61  gagttctctccctcttgaatgtttctatctcctttcactgatgctcagggagacttgtga 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagttctctccctcttggatgtttctatctcctttcactgatgctcagggagacttgtga 320

                                                                       
Query: 121 cttgagctggaaaatactgctctgggagggaagaacggtctgttgtcctaaagcagtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgagctggaaaatactgctctgggagggaagaacggtctgttgtcctaaagcagtgtg 380

                                                        
Query: 181 accttggaaatgtatctaatcttttctggactccatgcctttctt 225
           |||||||||||||| |||| ||||||||||||| ||| |||||||
Sbjct: 381 accttggaaatgtagctaaacttttctggactcgatgtctttctt 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)