BAC Information

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BAC

Clone NameMSMg01-276K08
Chromosome15 (Build37)
Map Location 71,894,333 - 71,894,649
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383051, 1700010C24Rik, LOC100040847, Col22a1
Downstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13, LOC100041120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-276K08.T7 (MSMg01no276_k08.b1)MSMg01-276K08.TJ (MSMg01no276_k08.g1)
ACCAG414772AG414773
length748754
length of high quality
(start - end)
367 (368 - 734)317 (438 - 754)
definitionCHROMAT_FILE: MSMg01no276_k08.b1 PHD_FILE: MSMg01no276_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:37 2005CHROMAT_FILE: MSMg01no276_k08.g1 PHD_FILE: MSMg01no276_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:16:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTACCACAGTGGCGTGGGACTTTCAGGAAATGAGATGATCCCAATCA
GCCTGCTGAGTATATTGTCTTAGAAAGGGTTCTTAGCAATCCTTTAGCTT
TAGGCTTATGTATATCCTAGTAAATTTAGCAGGACAATAAACATCAGAGA
AGATAGAGTTATCTTGTGAAGCCTCAGAAGGGCCCCTTCTATTGAACAAA
CTCACAGATCTTTAAGGTTTTTTTTTAATTAGGTATTTTCTTCATTTACA
TTTCCAATGCTATCCCAAAAGTCCCCCATACCCTCCCACCCACACTCCCC
TACCCACCCTTTTTCACTTCTTGGCCCTGGCATTCCCCTGTATTGAGGCA
TATAAAGTTTGCAAGACCAATGGGCTTCTCTTTCCACTGATGGCCGACTA
GGCCATCTTCTGATACATGGGCAGCTAGAGACATGAGCTCTAGGGGGTAC
TGGTTAGTTCATATTGTTGTTCCACCCATAGAGTTGCAGATCCCTTTAGC
TCCTTGGGTACTTTCTCTAGCTCCTCCATTTGGGGGCCCTGTGAACCATC
CAATAGCTGACTATGAGCCTCCACTTCTGTGTTTGCTAGGCCCCAGCATA
GCCTCACAGAGACAGCTATATCAGGGTCCTTTCAGCAAAATCTTGCTAGT
GTATGCAATGGTGTCAGCGTTTGGAGGCTGATTATGGGATGGATCCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGAGATGAGCCAGGCAGAATT
CCATATGTAACATTTTTGTTTGGCCCATGATGCTTTGTGAACGCCAATAT
GTAGATTGGATTTTGTGGAGACTCAGGCCTCTTGCAGGATCCTGTTACCC
ATAAGGATTAGCATGCTTAATAGTTCTCTCCACAACAGGAGATAGCACTT
TTTTTCTTGTTGTTTGACACCACCTTTCCCCCAAGGACATTCAAACAGTA
ATGTATTCTAGAACAGTCCTTCCCTGGATTAGACACACATTGAAAAACCA
AACACTCTCTTCCTTTTTATTGAATTACCCCGTCCACTGGGGAAGAAAAT
CCTCTTTTCCCTACTTTTCTATTTTTTTTATGAGATTTCTAGTCCAAAAA
TAATTTATATTCAAAACTGTTGAAATACATCTGATAACAGAATGGCTTAT
TGGCAGGGTATTTGCTGACATTTTGTGAGCTTTGGTTGTTTTAGAATAAA
TTTATAGAATAAATCATAAATCATTGGAATGATGTCACTATCCTAGTGCG
AATGGGACTTGGAGCTGAGAGATGGTTTGTCTGAAGCTAACAAGTAAATT
TCATCCCTGGAAATACAAATCCCCATCTGGCTGGCTCCAAAGTCCTGTGC
CCTAGATAAACCTATTTTGTTGGCCACATAGATTTGGGTTTGTAAATGAG
TTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no276_k08.g1 MSMg01no276_k08.g1 CHROMAT_FILE:
MSMg01no276_k08.g1 PHD_FILE: MSMg01no276_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:16:37 2005
         (317 letters)



>mm_chr15_71894133_71894849
          Length = 717

 Score =  613 bits (317), Expect = e-180
 Identities = 317/317 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctagtccaaaaataatttatattcaaaactgttgaaatacatctgataacagaatggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctagtccaaaaataatttatattcaaaactgttgaaatacatctgataacagaatggct 260

                                                                       
Query: 61  tattggcagggtatttgctgacattttgtgagctttggttgttttagaataaatttatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattggcagggtatttgctgacattttgtgagctttggttgttttagaataaatttatag 320

                                                                       
Query: 121 aataaatcataaatcattggaatgatgtcactatcctagtgcgaatgggacttggagctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataaatcataaatcattggaatgatgtcactatcctagtgcgaatgggacttggagctg 380

                                                                       
Query: 181 agagatggtttgtctgaagctaacaagtaaatttcatccctggaaatacaaatccccatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagatggtttgtctgaagctaacaagtaaatttcatccctggaaatacaaatccccatc 440

                                                                       
Query: 241 tggctggctccaaagtcctgtgccctagataaacctattttgttggccacatagatttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggctggctccaaagtcctgtgccctagataaacctattttgttggccacatagatttgg 500

                            
Query: 301 gtttgtaaatgagtttg 317
           |||||||||||||||||
Sbjct: 501 gtttgtaaatgagtttg 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)