BAC Information

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BAC

Clone NameMSMg01-278E23
Chromosome15 (Build37)
Map Location 62,541,792 - 62,541,955
singlet/doubletsinglet
Overlap genenone
Upstream geneMyc, Pvt1, LOC100040584, H2afy3
Downstream geneLOC100040430, Tsg101-ps, EG239502, EG432959
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278E23.T7 (MSMg01no278_e23.b1)MSMg01-278E23.TJ (MSMg01no278_e23.g1)
ACCAG415967AG415968
length660739
length of high quality
(start - end)
164 (126 - 289)---
definitionCHROMAT_FILE: MSMg01no278_e23.b1 PHD_FILE: MSMg01no278_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:36 2005CHROMAT_FILE: MSMg01no278_e23.g1 PHD_FILE: MSMg01no278_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCACTATACCGAGAGGATCCGCGGAATTCTCCCTTACCCAAGAGAGG
AAGAATGGNTTTATATGGNATTATNTTTNNAAGAGTGGTATTTTCCCCTT
TTATCAGAGTGGAAAGGNCGAATGGAGGATGATGAGAGGNTCTCTGTCAA
TTCCTATTACCAATCAGTAGAAATGATGTGAGGATCCCAGGCTTTCCCAC
ATGTTTCTTGCCAAGGGCTGTACTATTTTGTTCTATTGCCTTGAATTACC
TGTGATAAGGAGGGGGTGTTAGTTAAATATTTTCTACCTTTTTTTGACCT
TATTTGTGTAGGACACCTTTTCTTCCAAGTTTTAGTTTCTTGTCCCCNAA
CAGACCCCCCCGAAGATATATTTTAGGATGATNTANNANNNTTTTGAAAA
GTAGTNATAAAATTGTGGGGGGGAGGTGGTGGTCTTTGATTGTNNTTTAN
AGGGTTTGATTTAAAATTTGTGATATATGTAGTTAATTTNTTGAATTATT
TTTTTATTGAGTGGTAAAATGAGGTTATATGTATTCACCCCGGTATATCA
CAACCCTACCTACATAGTATTTATTTTGTTCATGTGGACCATCCTTTTTG
AGTCCCTGTTTGGAGCTTTGCGGATAAATTATTCCAGTGCTATGATAATA
CTGCTTATTN
AAGAAAGAAAAAAAAAAAAAAGGGGGCCCNNNNNCNNCNNNAGATNNNNN
CAACGAAGACATGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTGCCCACAAAAGGGCTCANNTGAGGAATAACGAATGGNT
GAGAAGNANNTGATTTCCCCCCAAGAAAGGTAATNATAAGGGAAATGGNA
AAATAAAAAANAATGAGATTTNAAATTATANTAGTAAGAATGGTTAAGAT
AAAAAANTNAGGTGAAAGAAGATGATGGAGAGGATGTGGAGAAAGAGAAA
TATTCCNTAAATGTTGGTGGGAAAGGAAGATTGTAAANNAATATGGAAAT
AAGTNAGGNAGTTTTTTTTATAATTGGAAATAGAAAAAATGGAGGAAAAA
GTTTTTGGTGGTTTCCCCCCCCCCCCCCCCCCGAAGANAATTGGTAAGAA
GGAGAATGTTTNTTTAAAATTTAGNTTAAAAAAGGGGNTGGTNNNGAGGT
GGANAGAANNTANATGNNNTTTAATAGAGGAATGGATAAAGAAAATGTGG
GAAATTTAAAAAAGGGAATAGTAATNAGGTATTTAAAAAATGAAATTAAT
GAAATTAGTAGGGGAAAAGAATGGAAGATGGAAGGGAAAAAATATGAAAG
GAAGGGAGAAAAAGATAAAAAAGGAAATGAAGAGAAAGAGGGGAATGTTG
TGAATAATGGGGAAAAGGGAAGGTGAGAAAAAGGTAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_e23.b1 MSMg01no278_e23.b1 CHROMAT_FILE:
MSMg01no278_e23.b1 PHD_FILE: MSMg01no278_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:36 2005
         (164 letters)



>mm_chr15_62541592_62542155
          Length = 564

 Score =  311 bits (161), Expect = 1e-89
 Identities = 163/164 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggatgatgagaggntctctgtcaattcctattaccaatcagtagaaatgatgtgaggat 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aggatgatgagaggctctctgtcaattcctattaccaatcagtagaaatgatgtgaggat 305

                                                                       
Query: 61  cccaggctttcccacatgtttcttgccaagggctgtactattttgttctattgccttgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cccaggctttcccacatgtttcttgccaagggctgtactattttgttctattgccttgaa 245

                                                       
Query: 121 ttacctgtgataaggagggggtgttagttaaatattttctacct 164
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ttacctgtgataaggagggggtgttagttaaatattttctacct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)