BAC Information

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BAC

Clone NameMSMg01-278H19
Chromosome15 (Build37)
Map Location 64,304,542 - 64,304,785
singlet/doubletsinglet
Overlap genenone
Upstream geneEG239502, EG432959, LOC672194, Mlze, AI987692, Gsdmdc2, 9930109F21Rik, LOC665769, 9030605I04Rik, 4933426G20Rik, 0910001A06Rik, Ddef1
Downstream geneAdcy8, LOC268812, LOC100040790, LOC665836
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278H19.T7 (MSMg01no278_h19.b1)MSMg01-278H19.TJ (MSMg01no278_h19.g1)
ACCAG416099AG416100
length717715
length of high quality
(start - end)
658 (39 - 696)281 (77 - 357)
definitionCHROMAT_FILE: MSMg01no278_h19.b1 PHD_FILE: MSMg01no278_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:49 2005CHROMAT_FILE: MSMg01no278_h19.g1 PHD_FILE: MSMg01no278_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAAGAGGATCCGCGGA
ATTCCTCATTGCCACAATGTGGCTAATGACACCTAGGCACACATTCGGTA
CTAAGAGGCATGTGTGGCAATATTCACAGCAGTACTACACACACACACAC
ACACACACACACACACACACACACACACACACACCACAATTGAATAAAGG
CTTAAAAAAGAAGAATCTGCAGCTTCAGAGGGCTGGGAAGTCAACTTGGT
TGGTAGTTCAATTCCCAGAATCCACATGAAAAAGCCAGACATGACGGCAT
GTGCATGTAACCCCAGCACTGAAGAGGCATAGACAGGAGACTCTCTGGGG
CTCACTTGCCAGCCAGTCTAACTAAGCCCTTGTCTAAATCCCACCCCTTA
CATTGGCCTTACAAACCCCAAGCCAATGGGAATCCCTGTCTCAGAAAACA
AGGTGGACTTCTAAGGTGTGACACCTGAGGTTTACCTCTGGCTTCCACAA
ACATGTATACACATATATACCCCCATACACAGAGTGGGAGGGAGGAGAAG
AGGACGAGAGAGAGAGAAAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGCGCATTCTAAAAACAGACCAAAGTATTGTAGCCAGA
AAATAGCCCCATAGCCTGAGACACCACAGGACCTTGGTACCCTGACCTAT
CAGACTTCTGCCAAAGT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTAGCTTACTCCCACATCCTCC
GACTCCAGCATCCTCCGTGATCTGCTGGGTCCACTTCAACTTCTTTTTCT
TCTATCCATACAACTCTTACTAATACATCAGAAGTTCCCTTCACCACCTC
TCCTTCTTCACCAGAGAACAAGTCCTGGCAAACCACTTTGAAAGCACCTC
ATATGTCCTCAGAATCATCCAACACTTTTCAAGAAATGACCAAAAAAAAA
AAAAAGGTGGAGCGCAACCATGTGTCCCACATGTTAGCTGAGGACAGTCA
TGTTAGGTGATGTCAGTCACCGCACACGGACCAAGCAGAAGTGATGCTGT
GCTGGGCAAGGAAAAGAAAACACAACCCAGAACGTATCTCCTTTGGCATT
CTGCTTCTTCATCTTGGCCCTCCAAGCTATGCCCCCTCAATGCTCTAATA
CAGAGCATACTAGAATACATGCTGCAGCTCAGAAGGGTATCATTTGAGCT
TCTCACTAGGCCTGGGCAAGGAGTGACCCAAAATTTCTTCACAAGAACTT
CAAGGCCAGCTTCTAACCCTGCTTCTAGCAGAGGAGCCAACCAGGGTTGG
ATATGTAAAAGAGGCAGAGTCAATAGAATTAACAGTCAGGAAGTGAAGCC
CCTGGTGGGCAGAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_h19.g1 MSMg01no278_h19.g1 CHROMAT_FILE:
MSMg01no278_h19.g1 PHD_FILE: MSMg01no278_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:49 2005
         (281 letters)



>mm_chr15_64304310_64304985
          Length = 676

 Score =  404 bits (209), Expect = e-117
 Identities = 237/249 (95%), Gaps = 5/249 (2%)
 Strand = Plus / Minus

                                                                       
Query: 33  catcctccgtgatctgctgggtccacttcaacttctttttcttctatccatacaactctt 92
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 catcctccgtgatatgctgggtccacttcaacttctttttcttctatccatacaactctt 417

                                                                       
Query: 93  actaatacatcagaagttcccttcaccacctctccttcttcaccagagaacaagtcctgg 152
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 actaatacatcagatgttcccttcaccacctctccttcttcaccagagaacaagtcctgg 357

                                                                       
Query: 153 caaaccactttgaaagcacctcatatgtcctcagaatcatccaacacttttcaagaaatg 212
           |||||||||||| ||||||||||||||| || ||||||| ||||||||||||||||||||
Sbjct: 356 caaaccactttggaagcacctcatatgttctgagaatcagccaacacttttcaagaaatg 297

                                                                       
Query: 213 accaaaaaaaaaaaaaaggtggagcgcaaccatgtgtcccacatgttagctgaggacagt 272
           |||     ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 296 acc-----aaaaaaaaaggtggagcgcaaccctgtgtcccacatgttagctgaggacagt 242

                    
Query: 273 catgttagg 281
           |||||||||
Sbjct: 241 catgttagg 233


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 676
Length adjustment: 9
Effective length of query: 272
Effective length of database: 667
Effective search space:   181424
Effective search space used:   181424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)