BAC Information

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BAC

Clone NameMSMg01-279F08
Chromosome15 (Build37)
Map Location 102,765,624 - 102,765,882
singlet/doubletsinglet
Overlap genenone
Upstream geneKrt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13
Downstream geneHoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279F08.T7 (MSMg01no279_f08.b1)MSMg01-279F08.TJ (MSMg01no279_f08.g1)
ACCAG416724AG416725
length791948
length of high quality
(start - end)		272 (36 - 307)---
definitionCHROMAT_FILE: MSMg01no279_f08.b1 PHD_FILE: MSMg01no279_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:53 2005CHROMAT_FILE: MSMg01no279_f08.g1 PHD_FILE: MSMg01no279_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAGA
ATTTGCCTTTCTTTCCGCCGCGTCCTGTAGAGGAGAGAGGGGCGGGAGAA
AGAAAAGGGAAACGCGAATCTCCTGTGATTCTGTCTGCGTTTTGTAGCGT
AGGCTATTTTCTAGATATTTAACTATCACCTACGTTCGTTCATATTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGCGCGCGCGCGCGTGTGTGTGCAAGTGTGTGCAATTCTCTGATA
AAAATCGTCACTTTTTTTTTAATATGTATACGTTGTCAAACTGTATATTC
TTTTGAGTAAGTTCCCGATACAAAGCCCCAGAGATGGNGAGTGAGAATTT
GGTACCCCCCTTTTATAAATAAAAAAAAAAAGGTTCTGGGTCGTGGGGAG
CTGTTCTAACGGTGCCCCAGATTTTTAATCCTAATGTAGACTTGCATATG
TTCATTATTATCCATAAGTCTGAGCTATGCTTCCCTTATTTCTCTAAAAC
ACTGCTTCCTGTTTTGAAGCTTTGTCTTCCTCTCCTTGTATTATTCTTCC
GGTATTTACTTTTTCTTTTTTGTTTCCTATTCTTATTTTAATTATTTACT
TAGTTTTTTTGACCCAACTATGGTTCTTTTTTGTTCCGTCCCGTCTGGTT
GTGTTATATAACTTTCCTTTGTGTTAGGGATTATTATCTCTTAGGCGGCT
GCGGTTGTTCTTCTTTTTCCTTTGTTTAATTTATTTTTTGC

ACGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACCTGTAAAGNGAAAG
GCAGNTACACATTGTAAANNGTCAGGTGGAGGATGGGCGCCACGAATCAC
TACAGCAGAATAGGAGTGGCATGGGTGGGTGGGTGGGGGTGGGAAATNNA
GTGTTCTGATTTTCTCATCTAGATATATATTTCCCATCATTACCTTTACT
ATATTGCTTACCATTTCCATGTGCACGTAGATATATAATTTTTTTTTATA
TCTTTCTTTTTTAATAACCCATTATCTTTGTTACAGCTATTATTTTCACT
CTCTCACCCCACCTCTTTTTTTTTTTTCTTTAATAAATACATTACTTGAT
TATGATAGTTTTTTTTANGGTGACTCCCAGAAAACAAGATTCCCCCTATA
TTTTGTGTTTATATATTTATTTTATTTCCCCCCCCCCTTTATAAAAAAAA
AAAAAAAAAATCCTTTGGGTGGTGTGGTTTCTCCTTTTACTTTCTATTTT
ATTATCTTTCCTTCATACCTTCTTCTCTCCTTTCTTGTTTTTTTTTTTTT
CTCTTCTTTTTTTCACTTATATATCTTTCCCTCACATCTTCTCCATCTAT
ATATTCTTCTTTTTATCTATTTCCATTAATTTCTTAATATTAATTTAATT
TATATACTACTCCACTAATAAATATTATATTAACATTATACTTCTCCTTT
TATCTCGGCTTTTCTTTTCTCTTTATACTATAATCTCTTCTTTTATCTTC
TTACCTATTACCACCATTTATTATCTTTTTATGTTTCTTCTCTCTCTTCT
CTTTTTTTTTCACTCTCTCTTTCTAAATTCTCTTCTTTTTATTGTTTTCT
CCTCTTTTTCTCTTTTCTCCCTCATCTCCACATATATACCTCATACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_f08.b1 MSMg01no279_f08.b1 CHROMAT_FILE:
MSMg01no279_f08.b1 PHD_FILE: MSMg01no279_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:53 2005
         (272 letters)



>mm_chr15_102765421_102766092
          Length = 672

 Score =  439 bits (227), Expect = e-128
 Identities = 254/269 (94%), Gaps = 10/269 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaagaatttgcctttctttccgccgcgtcctgtagaggagagaggggcgggag 63
           |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaagaatctgcttttctttccgccgcgtcctgtagaggagagaggggcgggag 263

                                                                       
Query: 64  aaagaaaagggaaacgcgaatctcctgtgattctgtctgcgttttgtagcgtaggctatt 123
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaagaaaagggaaactagaatctcctgtgattctgtctgcgttttgtagcgtaggctatt 323

                                                                       
Query: 124 ttctagatatttaactatcacctacgttcgttcatattctctctctctctctctctctct 183
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttccagatatttaactatcacctacgttcgttcatattctctctctctctctctctctct 383

                                                                       
Query: 184 ctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgcgcgtgtgtgtgc 243
           ||||||||          ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctctctct----------gtgtgtgtgtgtgtgtgtgtgcgcgcgcgcgcgtgtgtgtgc 433

                                        
Query: 244 aagtgtgtgcaattctctgataaaaatcg 272
           |||||||||||||||||||||||||||||
Sbjct: 434 aagtgtgtgcaattctctgataaaaatcg 462


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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