Query= MSMg01no280_d11.b1 MSMg01no280_d11.b1 CHROMAT_FILE:
MSMg01no280_d11.b1 PHD_FILE: MSMg01no280_d11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:00 2005
(701 letters)
>mm_chr15_23614402_23615500
Length = 1099
Score = 1257 bits (650), Expect = 0.0
Identities = 686/698 (98%), Gaps = 4/698 (0%)
Strand = Plus / Minus
Query: 4 ggaattcacatcctgtctccttataattacctaaaactcatattcaaagatataagaagt 63
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 ggaattcacatcctg-ctgtttataattacctaaaactcatattcaaagatataagaagt 791
Query: 64 actcttctagtctctgccgcggcaaaagtatacaacacacacatacaaatacacacaaat 123
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 actcttctagtctctg-tg-ggcaaaagtatacaacacacacatacaaatacacacaaat 733
Query: 124 -aaaaaaaatcaatcattaaaaaataaaaagaaattagaatcacatggaagaaaagcaca 182
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 732 aaaaaaaaatcaatcattaaaaaataaaaagaaagtagaatcacatggaagaaaagcaca 673
Query: 183 cataaaagcaagcatgcactcactggatgctgtgctttaagatgtgctcataaagaaaat 242
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 672 cataaaagcaagcatgcactcactggatgctgtgctttaagatgtgctcacaaagaaaat 613
Query: 243 gttttgaattcaggcttggaagtttgctttaaattaattagtaaacaatgcatttttaaa 302
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 612 gttttgaattcaggcttggaagtttgctttgaattaattagtaaacaatgcatttttaaa 553
Query: 303 acacaaaaatatatgcagttactttttcacatctttaaaatactgaaacagtgaggtgtc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 acacaaaaatatatgcagttactttttcacatctttaaaatactgaaacagtgaggtgtc 493
Query: 363 tcataaatgaaaatatttcagagaaagaatgaaaacgtgaatttgacttctggaacccac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tcataaatgaaaatatttcagagaaagaatgaaaacgtgaatttgacttctggaacccac 433
Query: 423 aaagcagtgggaagagagaggtgactcaatgttgtcctttgtccgcctcacacgtgtgtg 482
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaagcagtgggaagacagaggtgactcaatgttgtcctttgtccgcctcacacgtgtgtg 373
Query: 483 cctaatattgatgtatcaacttatacctggggcttgagatagtaagcatatgtgataagc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cctaatattgatgtatcaacttatacctggggcttgagatagtaagcatatgtgataagc 313
Query: 543 ataagataagcaaatgtgaaaaacaacaatttttaatatttattttactagtactgtgtg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 312 ataagataagcaaatgtgaaaaacaacaatttttaatatttattttactagtactatgtg 253
Query: 603 tgtgaacaagggcacaaatgttaaaataaggaaagaaaaaatgattcactaaataggtag 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 tgtgaacaagggcacaaatgttaaaataaggaaagaaaaaatgattcactaaataggtag 193
Query: 663 atacatagatacatagacaggcagacatacagataaat 700
||||||||||||||||||||||||||||||||||||||
Sbjct: 192 atacatagatacatagacaggcagacatacagataaat 155
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1099
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1089
Effective search space: 752499
Effective search space used: 752499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no280_d11.g1 MSMg01no280_d11.g1 CHROMAT_FILE:
MSMg01no280_d11.g1 PHD_FILE: MSMg01no280_d11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:00 2005
(304 letters)
>mm_chr15_23475454_23476156
Length = 703
Score = 540 bits (279), Expect = e-158
Identities = 297/303 (98%), Gaps = 1/303 (0%)
Strand = Plus / Plus
Query: 1 tagtgaggttattcttttaagttaatactataaatcctttctgtcacagctctcagaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagtgaggttattcttttaagttaatactataaatcctttctgtcacagctctcagaatc 260
Query: 61 cttagaagtctggcttggtcccagaaaagcccacttttgtatacctatgcactagcaatc 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 cttagaagtctggcttggtcccagaaaagcccactttcgtatacctatgcactagcaatc 320
Query: 121 atgcttcttatttttttactcctagacttctgagaaagaaccatgtctgttttctcagct 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgcttcttatttttttacgcctagacttctgagaaagaaccatgtctgttttctcagct 380
Query: 181 tgctaccccatgatgccaaatattcgtatttgctttttcaatttttaataatagtgcaaa 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 tgctaccccatgatgccaaatattcgtatttgctttttcagtttttaataatagtgcaaa 440
Query: 241 taataaacaggtttgatattaaaaaatcctttcaaaatcatttcacattcttatattagg 300
|||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 441 taataaacagatttgatattaaaaa-tcctttcaaaatcatttcacatttttatattagg 499
Query: 301 cag 303
|||
Sbjct: 500 cag 502
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 703
Length adjustment: 9
Effective length of query: 295
Effective length of database: 694
Effective search space: 204730
Effective search space used: 204730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
