Query= MSMg01no289_m22.b1 MSMg01no289_m22.b1 CHROMAT_FILE:
MSMg01no289_m22.b1 PHD_FILE: MSMg01no289_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:12 2005
(318 letters)
>mm_chr15_48751478_48752195
Length = 718
Score = 557 bits (288), Expect = e-163
Identities = 308/316 (97%), Gaps = 4/316 (1%)
Strand = Plus / Plus
Query: 5 gaattccaatccct--tcctcttgaaggaagagtctacagtccataggaggataatatta 62
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatccctaat--tcttgaaggaagagtctacagtccataggaggataatatta 262
Query: 63 atgagtatttactttagcttgcttttgtcactacagaatgtaattataagacaaatattt 122
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 atgagtatttactttagtttgcttttgtcactacagaatgtaattataagacaaatattt 322
Query: 123 ttcagccaaagattatggaaacaaaatttgaaatttgtctctgtgtaccatggaacacca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttcagccaaagattatggaaacaaaatttgaaatttgtctctgtgtaccatggaacacca 382
Query: 183 cttagaaattggaggaaatataaaatgtgtagatagttcaatgaaaagtgactgtcatgt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 383 cttagaaattggaggaaatataaaatgtgtagatagttcaatgaaaagtgactctcatgt 442
Query: 243 gagcactgggacctgagttaacctccctattatctatattccaagtcaggtccatgacat 302
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 443 gagcactgggacctgagttaacctccctattatctagataccaagtcaggtccatgacat 502
Query: 303 tcctgtcatcctagta 318
||||||||||||||||
Sbjct: 503 tcctgtcatcctagta 518
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no289_m22.g1 MSMg01no289_m22.g1 CHROMAT_FILE:
MSMg01no289_m22.g1 PHD_FILE: MSMg01no289_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:12 2005
(653 letters)
>mm_chr15_48903708_48904756
Length = 1049
Score = 946 bits (489), Expect = 0.0
Identities = 526/541 (97%), Gaps = 6/541 (1%)
Strand = Plus / Minus
Query: 1 cactcatttctaagagcaaaattgaccattggacattttatatctctatcatatacaata 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 cactcacttctaagagcaaaattgaccattggacattttatatctctatcatataca--- 480
Query: 61 tgatatgatatatctggatatctatacatatatgagaataacttcaccattaatacacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 --atatgatatatctggatatctatacatatatgagaataacttcaccattaatacacct 422
Query: 121 gtcactttaattttttacttgtttccctggagaaaaaacacaatttttatcattaccacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtcactttaattttttacttgtttccctggagaaaaaacacaatttttatcattaccacc 362
Query: 181 catagtcacactgctctttgaaatttcaaaacttactcatcttattttatatagagtgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 catagtcacactgctctttgaaatttcaaaacttactcatcttattttatatagagtgca 302
Query: 241 taatatttggcctaagttcatcatttccatttcccagtatttcccaaggatcactccaaa 300
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 301 tgatatttggcctaagttcatcatttccatttcccaggatttcccaaggatcactccaaa 242
Query: 301 ctatgcttctttcag-ttggcaatattagattctaaggaagcaccaccatgcttaccagg 359
||||||||||||||| ||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 241 ctatgcttctttcagtttggcaatattagattctaaggaagtaaaatcatgcttaccagg 182
Query: 360 catttctccaaaaagaaatagctaagagatattttaaattgttcccaatatcactaataa 419
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 181 catttctccaaaaagaaatagctaagagatattttaaaatgttcccaatatcactaataa 122
Query: 420 tcagagaaatgcaattttaaacctctgtgatatattttgccagacatgttaggaaggctg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tcagagaaatgcaattttaaacctctgtgatatattttgccagacatgttaggaaggctg 62
Query: 480 ttaacaagattgaaatgcatttgagatggatgtagtgaaagggagccactttcacactgt 539
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttaacaagactgaaatgcatttgagatggatgtagtgaaagggagccactttcacactgt 2
Query: 540 t 540
|
Sbjct: 1 t 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1049
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1039
Effective search space: 668077
Effective search space used: 668077
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
