BAC Information

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BAC

Clone NameMSMg01-290L22
Chromosome15 (Build37)
Map Location 44,591,452 - 44,591,791
singlet/doubletsinglet
Overlap gene5730410E15Rik
Upstream geneLOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1, Eny2, Pkhd1l1, Ebag9
Downstream geneA930017M01Rik, EG432950, Kcnv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290L22.T7 (MSMg01no290_l22.b1)MSMg01-290L22.TJ (MSMg01no290_l22.g1)
ACCAG419940AG419941
length736736
length of high quality
(start - end)
351 (386 - 736)340 (383 - 722)
definitionCHROMAT_FILE: MSMg01no290_l22.b1 PHD_FILE: MSMg01no290_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:22 2005CHROMAT_FILE: MSMg01no290_l22.g1 PHD_FILE: MSMg01no290_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTACTGCCCCTGGTATTACACTATCTCTTTGAGTAAAAGTTAGG
TCACTGCCCTTCACAGGAATTTACCACCACTAAGGAAAAAAGAAGTTTCT
GACCATAGGAGAAACCAGAATAGATATTTAGAATTATAGCTGAGTTACGC
CTATATACAGGAATTTACAATGGTTTAGGAAGTAGATCCGGCTGTGGTTT
TAGAGTATTGCATTATTCATGAGATGGTTAGCTAGAATGGAACTCCCTAG
TTAGAACCATGACTTGGGTGTAACAGCCCTTGCCCTAGGAGTGAAAAAGT
CTCACACCTGGCTTCTATTATTATAGCTGACCCTACATAGGGCTGACTTT
GTCTCAGTTATTTTTATTGCCCAGTTCCTGCCAGTCTGTGCATTTTTCAT
TCCTCTGTTCTGTGTAAGAGTCATTAAGCATCCGGTTACCTCATTTGTAC
CTTGCGGTTATGTCACCCAACTACCTTGTTGTCTTCTGAATAAAAAGTCT
GATGTTCGATTTGAAAAATTACATTCAGATTCCACACAAACTCTCCTGTG
TGCGTCTGTCTGTCATTCATCCACGCTTTGCCCACCCGTGTCGAGAGACC
CCGTTCCACGCAGACACAAGGACCCAGAGGGTCTGCGGCAGGGGGCGGTG
CATCTAGAGACAGAGACCTGGTGCCCACAGAGACCT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGTAAATATCGGGAGAAACTTAG
TCAATTTGCCATGATAATAGAAAATAACTGTAATTTCTTAATTTTATTTG
ACTCCGTTGCATGAGACCCAGGCAATGTTTGAATTGCTCTGTGGCCATGG
AAAGCAGAGGGAACAGTGACTGTCACTCAAATTCTAAGCCATGCAGTGGG
GTGCGTAGCTCATTTTTCTGTTTTTGGTTTTTTTTTTTTTGTTTGTTTGT
TTTTGATGATTTTAAATTAAATACTAAATTATAATTATTTTAACACAGGA
TGAACACATGACCATTTGATATTAGTATAGCGACCCTTTTCCAGCTATAA
ACTATATTTTAAGATAGACCCAGAATGAGTTCACATAAAAATATGACATA
AGTAAAATTTATTAACCTGAAATGTGTTTACTGTTTCAAGTTAAAAGTTA
CAATCCTATGAAAATTACATCTTTAAAGAAAGTTCTTAGCTGAATCTTTT
CAGTCCCTTTTCCGCAGGGCATTGCTGTTTCTATAAATATTAAAACTAGC
ATTAGGAAACATGCTCCATCCTTTCCTTTGCTACTGGCTCTAGTAGTACT
CTTTGCTGCAGACCACACAGTTCTCCATAAATAAACATATATGAAGGGAA
ACAGTTCACAGGAGCTTTAAGCAGAAATGCCATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_l22.g1 MSMg01no290_l22.g1 CHROMAT_FILE:
MSMg01no290_l22.g1 PHD_FILE: MSMg01no290_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:23 2005
         (340 letters)



>mm_chr15_44591252_44591991
          Length = 740

 Score =  634 bits (328), Expect = 0.0
 Identities = 337/340 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acccttttccagctataaactatattttaagatagacccagaatgagttcacataaaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acccttttccagctataaactatattttaagatagacccagaatgagttcacataaaaat 260

                                                                       
Query: 61  atgacataagtaaaatttattaacctgaaatgtgtttactgtttcaagttaaaagttaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgacataagtaaaatttattaacctgaaatgtgtttactgtttcaagttaaaagttaca 320

                                                                       
Query: 121 atcctatgaaaattacatctttaaagaaagttcttagctgaatcttttcagtcccttttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 atcctatgaaaattacatctttaaagaaagttcttagctgaatcttttcagccccttttc 380

                                                                       
Query: 181 cgcagggcattgctgtttctataaatattaaaactagcattaggaaacatgctccatcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 cgcagggcattgctgtttctataaatattaaaactagcattaggaaacacgctccatcct 440

                                                                       
Query: 241 ttcctttgctactggctctagtagtactctttgctgcagaccacacagttctccataaat 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 ttcctttgctactggctctagtagtactctttgctgcagaccacacagttctccatgaat 500

                                                   
Query: 301 aaacatatatgaagggaaacagttcacaggagctttaagc 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaacatatatgaagggaaacagttcacaggagctttaagc 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)