BAC Information

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BAC

Clone NameMSMg01-291C08
Chromosome15 (Build37)
Map Location 70,848,084 - 70,848,327
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383050
Downstream geneLOC383051, 1700010C24Rik, LOC100040847, Col22a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291C08.T7 (MSMg01no291_c08.b1)MSMg01-291C08.TJ (MSMg01no291_c08.g1)
ACCAG420227AG420228
length734736
length of high quality
(start - end)
319 (46 - 364)244 (126 - 369)
definitionCHROMAT_FILE: MSMg01no291_c08.b1 PHD_FILE: MSMg01no291_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:52 2005CHROMAT_FILE: MSMg01no291_c08.g1 PHD_FILE: MSMg01no291_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATACTGAGAAAAATTTAGTATTACTTGTGTGATGGTTTGTATATT
CTTGGACCAGGGAGTGGTTCCATTTGGAAGTGTGGCTTTGTTGGAATAGG
TGTGACCTGGTTAGAGTAGGTGTGTCACTGTGGGTGTGAGCTTAATACTC
TCACCCTAGGTGCCTGGAAGTCAGCTTTTCACTAGCAGCCTTTGGATGAA
GAAGTAGAACTCTTTTTTTTTTTTTTAATGAAGATTGGTTAGCGTAATTT
AGTTTTTTTTAATATTTTTTATTACTTATTTTCCTCAATTACATTTCCAA
TGCTATCCTTTTTTTTTCCCCTACCCTCCCCCCTACTCCCCTACCCACCC
ATTCCCACTTTTTCGCCCCCGCAAAACACATGTACTGGGGCATATAGAGT
TTGCTTGTCCAATGGGCCTCTCTTTCTAGGGATGGCTTACTAGGCCATCT
TTGGATACATATGCTGCTAGAGTTCAGATCTCTGGGTTATTGGTTATTTC
ATAATGTTGTTGTTCCTATTAGATTGCTTATCTCTCTATTTCCTTGGTTA
CTTTCTCTAGCTCCTCCATTGGGGGCCCCGAGATCCTCTCTTCACCTGAT
TGTTACCCCTCCTTTATTTTCCCTGATTTTTCCACCTTTTCTTCCCCTTT
ATATCCCCTTATTATTTTCCCGTTCTTTTTTTTT
CATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTGAGTAAAATAGGAATGTATTAA
TGGGTAGGAATATCCAGTATAACATTTACAAAACAACATGTGAGATAAGT
TTGATATATAATTTAACCTAAAGCTTGACCAGGAAGTATTTCCCTTCAGA
GGGAGATATTCAACACAATATGGCTTTCAGAAATAATATCAATCATTTTG
ATTCATCCTTATGTGATGTTAACCTAGATATTTCTAAGTGTGTCATAGTG
TGTCATCCCGTTTTTCTAGTTCCACAAATTCTGAAACAAGTAATTTTTAT
TTATTTATTTATTTTTTAGCTACCCCGCACCAATGGATGGTCTTTGGTAA
CTAAGAAAGTAGCACCCCCCACACGGATAATTTCAAATTTGTATTTGCCT
TTATTAGCAGAAATTCAGAGAGTATGTCAGCATCATCTTGACATATATGT
GTAAGGGTATTTCTGGAAGAGATTTGCTTTTCAGATGCTACATTTGATAA
GAAAATTTCACCCTCTCCAGAATGTTGGGGTGGGGGTCAAAATTGCCTGT
ACTAGATAAACCCAAAGGACCAAAGGAGGGTGAATTTCTGTCTTTCTTCT
GAAGCTGGTCTGATCATCTCCATTGCCCATGCCTTGCCGAACTTGGATTC
TCTAGGCCTTGCATCATAGGACTTTCCTCCCTACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_c08.g1 MSMg01no291_c08.g1 CHROMAT_FILE:
MSMg01no291_c08.g1 PHD_FILE: MSMg01no291_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:52 2005
         (244 letters)



>mm_chr15_70847884_70848527
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttacaaaacaacatgtgagataagtttgatatataatttaacctaaagcttgaccaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttacaaaacaacatgtgagataagtttgatatataatttaacctaaagcttgaccaggaa 260

                                                                       
Query: 61  gtatttcccttcagagggagatattcaacacaatatggctttcagaaataatatcaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatttcccttcagagggagatattcaacacaatatggctttcagaaataatatcaatca 320

                                                                       
Query: 121 ttttgattcatccttatgtgatgttaacctagatatttctaagtgtgtcatagtgtgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgattcatccttatgtgatgttaacctagatatttctaagtgtgtcatagtgtgtca 380

                                                                       
Query: 181 tcccgtttttctagttccacaaattctgaaacaagtaatttttatttatttatttatttt 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccttttttctagttccacaaattctgaaacaagtaatttttatttatttatttatttt 440

               
Query: 241 ttag 244
           ||||
Sbjct: 441 ttag 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)