BAC Information

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BAC

Clone NameMSMg01-291G20
Chromosome15 (Build37)
Map Location 69,992,368 - 69,992,665
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383050
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291G20.T7 (MSMg01no291_g20.b1)MSMg01-291G20.TJ (MSMg01no291_g20.g1)
ACCAG420428AG420429
length758757
length of high quality
(start - end)
304 (430 - 733)616 (68 - 683)
definitionCHROMAT_FILE: MSMg01no291_g20.b1 PHD_FILE: MSMg01no291_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:12 2005CHROMAT_FILE: MSMg01no291_g20.g1 PHD_FILE: MSMg01no291_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTTTTACCATTTCATTACATAAAGTACAAACTTTAGGATTATATTCATGC
ATCTGACAATATTGCACCTCATTCATTTCTTTCTTTCTTAAAAATACCTT
CCTATTGTATAATTTAGAATACCTCTATAATAGCAATGCCAGAGTGTTTA
TTTCAAAGAAAATATTTCTATTCGTCTTTGCTCATGAAATACAGTTTTAC
TGTGTTTACAATTCCAAATTGACATGTTTTTCTATCTTTCTTTATAGTAT
CTTCTAATGTTTATTGTTCTTGAAAATTCGTATTTTTTTCAGAACAGAAG
TATTTTTTTATTTACCCCCCCCCACTTATAGGACTTTTGGGATATCATTT
GGAAATCCCCCACTTTAAGATTATTATTACATTTAAATTATGCCCAAAGA
TTACTTTCATAATGCTTTCAGATGCTTTGTTAGGATATATCAAAGAATTA
CATAATTATTTGCTTAATTTTTGGTCTGTATACATCCTTAATATGGACCT
TAAATAAAAGATTTTATGAATTTTCCAACAACCCACTATTAGTGAACATA
TATTGTGCTTGCATTGTTGTGACTATTTTGGGATTTATTACCAAATCTGT
GCTGTAAATCTAAAAATCATTATTTCATATTTGGATTGTCCATATTAGTG
TCCACATGAGAGAAAAGTTGATGTGTTTTGCTTTGCTTTGTTTTGTTTTT
TTTCTGTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACGCCCAGTCACTGCCCATCTCAGGGCATAGTA
ATGGGGTGATGGGCAACCAACTAATCAGGTGCTGTCACGCCACATCAGGT
GCTGAAACGTCACACTGCGGGCTATATAAGCAGCACCATTTTCCGGGTTC
GGGTCTTCCTTATGTGGAAGCAATAAAAGCCTTGCCATAGAAGGATCCAG
TTGTCCAAGTGAATTCTTGCCGGCGAGATACTAGCTTGGGCAAGACCTAG
CCAATATCCTGCTTTTGGGAACAGGTGTGTTCTCCCAGATACAAAGCGAT
TCTGCATCATCCTCCTCCCCATACCCAGCTTCTGTGGGCATAAAACCTGC
CTGGGATCCACAAAAATTTGACAGCTGGGTCAATCAGTCCTTGTGTTTCT
TGCCTCTCGTTCTCTCCACAGGTGGTTCCTCAGACCCTGTTCGACTATCC
CACGGGGTTGGCAGCAAGGGATTGAAGGAGGACATAATCTGGATGTTCCT
ACTGCAAGCAATCCTCAGGGAATGCTGGCAGCATTGTGGAATACAAATGT
ATTGCAGGTGACAAGGCTGCTGCTGGTGTACCTACGGGGACCTGGGAGGC
AAGGGTCTTGGCACAGAGTCCTATCTGGTTGTTTCAGAATTTGGAAGGCC
CTCAGGAATCAGACAGAATTTTAGGCTAAGAGATGGATGGACCTCAGGGA
CAGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_g20.b1 MSMg01no291_g20.b1 CHROMAT_FILE:
MSMg01no291_g20.b1 PHD_FILE: MSMg01no291_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:12 2005
         (304 letters)



>mm_chr15_69992168_69992871
          Length = 704

 Score =  553 bits (286), Expect = e-162
 Identities = 295/298 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttaaattatgcccaaagattactttcataatgctttcagatgctttgttaggatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 catttaaattatgcccaaagattactttcataatgctttcagatgctttgttaggatata 439

                                                                       
Query: 61  tcaaagaattacataattatttgcttaatttttggtctgtatacatccttaatatggacc 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcaaagaattacataattatttggttaatttttggtctgtatacatccttaatatggacc 379

                                                                       
Query: 121 ttaaataaaagattttatgaattttccaacaacccactattagtgaacatatattgtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttaaataaaagattttatgaattttccaacaacccactattagtgaacatatattgtgct 319

                                                                       
Query: 181 tgcattgttgtgactattttgggatttattaccaaatctgtgctgtaaatctaaaaatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgcattgttgtgactattttgggatttattaccaaatctgtgctgtaaatctaaaaatca 259

                                                                     
Query: 241 ttatttcatatttggattgtccatattagtgtccacatgagagaaaagttgatgtgtt 298
           |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 258 ttatttcatatttggattgtccatgttagtctccacatgagagaaaagttgatgtgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)