BAC Information

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BAC

Clone NameMSMg01-291M05
Chromosome15 (Build37)
Map Location 71,740,268 - 71,740,551
singlet/doubletsinglet
Overlap geneCol22a1
Upstream geneLOC383051, 1700010C24Rik, LOC100040847
Downstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-291M05.T7 (MSMg01no291_m05.b1)MSMg01-291M05.TJ (MSMg01no291_m05.g1)
ACCAG420671AG420672
length733743
length of high quality
(start - end)
285 (129 - 413)228 (129 - 356)
definitionCHROMAT_FILE: MSMg01no291_m05.b1 PHD_FILE: MSMg01no291_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:38 2005CHROMAT_FILE: MSMg01no291_m05.g1 PHD_FILE: MSMg01no291_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:26:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTATTTATCCTAAAGTTCCCATCAATAGCCCCAGGTTTACAGCA
CATCTCATAAGAACATTTTTACCCAGAGCTGTGCAAGTTGTTCACCACTG
AAGTTTTCCCTTGAAGTCCCTAGATGCTGAGGATGAATAAGTCAACTGAG
TGTGGCTGTAAACTCTGAAAGCTATCGAAGAGTATACTGAGCTGGATCAA
TAGCCGTCCGATGAGGTAAGAAGGTGATAAGCCTTCCACTGCCTCAGTCC
CTGTTAATACCAGCTAATGTGTGCAGTTCAGTCTATCCTATACTCTAATT
GGACTGACTTATTATATTCCTCCATGACACAAGTCCTTATGCAGGACCCA
CACTGTTTCCTGACCCCCCACAGGAACAGGCACTATAGAGCTGAGTGAGA
GCCAGGCACTATTCTTACACAACCCACACATGGTGGCACAGGAACAAAGC
ATATAGCAAGTGGAGAGGCAATTCTCCTGACACTGTCAGTCTGGCTACAA
AGTCCCTCAGAACTACAAGTTGGCATTATTTGTAAATGTACACCATGGTC
TAGCGCTCTTCTGTGTTGACTATACTGAGCCCTGCCCATACTGTGATCTT
GAATTGACTGGCTTGGCGAAGCTGGATCCTTTATCCCACTGTCCCCATCT
ATATCGTCCCAGCGAGGAAATTCTCATTACGCA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTGCTAAAAAATTCTGTAATGTCAGCAACCCATTTCTGATAC
CATTTCTATTTTATTTAGACTACAAAGCATAACCAGCTACTGCAAGTTGT
ACAGCAAAAGTCGGCACTTCCTCATGATTTTGCAGTCTGGGCAAGGCTCA
GTTGGAGCACCTATCTCCCTGTACATGGCTGCAGCTGAGGAATGTCTGCT
TCTAAGAAGGCTCACCCTTAGGTCTAGCCAGCTTGTGTTGGCTGTAAGTG
GACCTTAAGTGGGGCCTCTTTTCCCACATGGCTGTGTTTCATTTCGCATG
GCATCTGTTCTCTCAACACGGCCCCTCCTGGGATTGGATTCTCAATAGTT
GTAATAGTACACCAACGTCACAACAAACATGTGATAGGGAAAAAGCTGAC
GATTACAAACATGACAACGTTTATGTGGACCAGGAGGCAGTGTGTGTGCA
CTTGGGTGCTTAACTGTGTAAGGGGGAAAGAATGGGTTTTGGGGAAAGGG
GCCGGAAAAGACAAAGGGGGGTTTTGTTTGCCAGCCTTTGTCAGGTGTAC
AAGGGTTTCGTTATTTTTTGGCCGGTCCCTCCTCGGGCTTTTTGCGCGTC
TTTTTTTTCGAGAAAAAAAATCATTCATTTTTCCCCCGCTCTGTGCCACT
ATTTCTTCACCTTGTCTGAACTTTCTCCGCCTCTCCTACATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no291_m05.b1 MSMg01no291_m05.b1 CHROMAT_FILE:
MSMg01no291_m05.b1 PHD_FILE: MSMg01no291_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:26:38 2005
         (285 letters)



>mm_chr15_71740068_71740751
          Length = 684

 Score =  497 bits (257), Expect = e-145
 Identities = 278/285 (97%), Gaps = 1/285 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgtgcaagttgttcaccactgaagttttcccttgaagtccctagatgctgaggatgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtgcaagttgttcaccactgaagttttcccttgaagtccctagatgctgaggatgaat 260

                                                                       
Query: 61  aagtcaactgagtgtggctgtaaactctgaaagctatcgaagagtatactgagctggatc 120
           ||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 aag-caactgagtgtggctggaaactctgaaagctattgaagagtatactgagctggatc 319

                                                                       
Query: 121 aatagccgtccgatgaggtaagaaggtgataagccttccactgcctcagtccctgttaat 180
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 320 aatagccgtccgatgaggtaaggaggtgataagccttccactgcctcagtccctgttaat 379

                                                                       
Query: 181 accagctaatgtgtgcagttcagtctatcctatactctaattggactgacttattatatt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 380 accagctaatgtgtgcagttcagtctatcctatactctaattggactgacttattaaatt 439

                                                        
Query: 241 cctccatgacacaagtccttatgcaggacccacactgtttcctga 285
           ||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 440 cctccatgacacaagtccttatgtaggacccacactgttccctga 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 684
Length adjustment: 9
Effective length of query: 276
Effective length of database: 675
Effective search space:   186300
Effective search space used:   186300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)