BAC Information

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BAC

Clone NameMSMg01-292L09
Chromosome15 (Build37)
Map Location 22,156,683 - 22,157,047
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh12, LOC100040351
Downstream geneEG545091, Cdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292L09.T7 (MSMg01no292_l09.b1)MSMg01-292L09.TJ (MSMg01no292_l09.g1)
ACCAG421358AG421359
length773778
length of high quality
(start - end)		369 (46 - 414)457 (77 - 533)
definitionCHROMAT_FILE: MSMg01no292_l09.b1 PHD_FILE: MSMg01no292_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:51 2005CHROMAT_FILE: MSMg01no292_l09.g1 PHD_FILE: MSMg01no292_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATTTAATTTTCATAATTAAAATGCACTCACATATACTCAGTTACT
AAACTTGATCATAAAAAAAGAGCCTAGAGCTATATGGAAAATTAAGAAAC
ACTTGAAAATCAAGTATTTTTCCAAAGTATCAAGTGTAGGTAATCTAATT
TTGAAAAGTAATATGTCAATCAATCAAGTGAAATACATTTAATTTCCCCC
AATCACTGAGAAACTATTTCATTAAGCCAAACATAAGAAAAGATTGATTC
TGCTATCCATATGCTTAATAGATTTTCAAACATTTTTTAGAAACTATTAA
TATTTTCACAATTGAAAACAATTCTTTAGAGATTCTTTAGACTTTATATG
GTTAAGTTTGGTTTCCCCCACATTTTTTAAAGATTATTCAGACNAAAAAT
TCTCACCGAAATTATGTTATACAGCATAAATCATCTACACTACCTGTGTT
TCACACTGCATGTCATCTTCTTTAACTTACAAAACCAATAATATGATGCT
TTTAATGTGTACAAGTGCTCTTTATGGGTAGAATACTATTTCTGCAATAT
ACTCTTAATACGTTACATGGTTCTCCAAATAGTAGGAGATGGAGAAAATC
TGACTGACTTCTCTGCATTTTTATTAATCCTCCTGCCAATTCTGCCATTT
TTGTAATTTAAGTGTATACACGCTTTGTTTCCCTTATCACAAACTTTTTT
TTTCTTTAACTTTTAAAATATCG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAATGATATGTACTCGCTGATAAG
TGGATATTAGTCCAGAAACTTAGGATACCCGAGATATAAGATACAATTTG
CAAAACACATGAAACTGAAGAAGAACAAAGACCAAAGTGTGGACACTTTG
CCCCTTCTTAGAATTGGAAACAATCACCCATGGAAGGAGTTACAGAGACA
AAGTTTGGAGCTGAGACAAAAGGATGGACCATCTAGAGACTGCCATATCC
AGGGATCCATCCCATAATTAGCCTCCAAATGATGACACCATTGCATACAC
TAGCAAGCGTTTGTTGAAAGGACCCTGATATAGCTGTCCCTTGTGAGACT
AGGCCGGGGCCTACCCCCACACATAAGTGGATGCTCACAGTCAGCTATTG
GATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTATCCAAGGAC
CTAAAAAGATCTGCAACCCTCCAGTGCAACAACTTTATGAACTAACCAGA
TCCCCGGAGCTTTTGACTCTAGCTGCTTATGTATCAAAAGATGGGCCTAT
TCGGCCATCCCCGTGATAGAGAGTCCCATCGGTACTTGCCAATCTTATTT
GCCTTATCCCCGGGTTTATCCCCGTGCCCTCACCCCGGTAATGTTTTCTT
TTCTTTCCCCTCCTATCCTCCTATCCCTCTCCCTTCCTTCCTATTATTCT
CCTCTTTGTCCCCCCCTGTTCCTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_l09.b1 MSMg01no292_l09.b1 CHROMAT_FILE:
MSMg01no292_l09.b1 PHD_FILE: MSMg01no292_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:51 2005
         (369 letters)



>mm_chr15_22156479_22157247
          Length = 769

 Score =  638 bits (330), Expect = 0.0
 Identities = 357/366 (97%), Gaps = 2/366 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttaattttcataattaaaatgcactcacatatactcagttactaaacttgat 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttaattttaataattaaaatgcactcacatatactcagttactaaacttgat 264

                                                                       
Query: 65  cataaaaaaagagcctagagctatatggaaaattaagaaacacttgaaaatcaagtattt 124
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cataaaaaaagagtttagagctatatggaaaattaagaaacacttgaaaatcaagtattt 324

                                                                       
Query: 125 ttccaaagtatcaagtgtaggtaatctaattttgaaaagtaatatgtcaatcaatcaagt 184
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttccaaagtattaagtgtaggtaatctaattttgaaaagtaatatgtcaatcaatcaagt 384

                                                                       
Query: 185 gaaatacatttaatttcccccaa-tcactgagaaactatttcattaagccaaacataaga 243
           ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaatgcatttaatttcccc-aagtcactgagaaactatttcattaagccaaacataaga 443

                                                                       
Query: 244 aaagattgattctgctatccatatgcttaatagattttcaaacattttttagaaactatt 303
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aatgattgattctgctatccatatgcttaatagattttcaaacattttttagaaactatt 503

                                                                       
Query: 304 aatattttcacaattgaaaacaattctttagagattctttagactttatatggttaagtt 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 504 aatattttcacaattgaaaacaattctttagagattctttagactttatatgattaagtt 563

                 
Query: 364 tggttt 369
           ||||||
Sbjct: 564 tggttt 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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