BAC Information

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BAC

Clone NameMSMg01-294P11
Chromosome15 (Build37)
Map Location 101,669,307 - 101,827,898
singlet/doubletdoublet
Overlap geneKrt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8
Upstream geneScn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001
Downstream geneKrt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294P11.T7 (MSMg01no294_p11.b1)MSMg01-294P11.TJ (MSMg01no294_p11.g1)
ACCAG422994AG422995
length744731
length of high quality
(start - end)
236 (129 - 364)194 (131 - 324)
definitionCHROMAT_FILE: MSMg01no294_p11.b1 PHD_FILE: MSMg01no294_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:45 2005CHROMAT_FILE: MSMg01no294_p11.g1 PHD_FILE: MSMg01no294_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,669,307 - 101,669,540)(101,827,705 - 101,827,898)
sequence
NATTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTCTGTCTCTCCAAATGGGTGACTTAAGTTTACATCCAT
AATCCTGGTAGGAAGAGAGTTTGACCCGAAGTAGCTGCTGACCAACCTGT
CTCTTACCTCACCACCCCAGCTTCTGCCTGTACCGGCTGGTGTGACCCAG
GTCGTGTACACGGAAGCCAGCTTCCTCATCTCCCTGGGTCTCACCCTCTC
ACCCTGCCTTGCCTACATCTGGGCTTCTACCCACCTCCTGAGATCTGACA
GCTTATTGTCTATAAAATGTATATTCTCGTTTTGGGTGGCTTTGTCATCT
TTAAGGACATGATTTTTTTGTCTCCCCTCCCACCTTTCTGTCTCTGTTCT
TGCAATTAATTCTCTCTCTCCAGGAAAGAAAAAGTCCAGTCCTCCCTGAG
TGACCATTTTCTTTTTTTAAGAGGAAATGGGTGGTCCACAGGCCACTAGA
CAGTCCTACTGCACAACTCTCTTGATGCTCAAATTAAATTCAGATGCAAG
TCAACGATTCTTGTGCCATTTGGTTCCTCTCCTTTAATTGTCAATTTTAA
ATAAACTTCGGTATTCTTCCCCTTACTCAAAACATACAAATCGTGAAATT
TCCATTGTGCTTCGGTGAATTTTTCACAACAGTAAACAAGAACCACTTGT
GGCTTAACATGCAGGTTTTTAAGGTCCTCCTTTTAAAGCTTTCN
NTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAAAAATTCCAGGGTGATTAGAGACAGACC
AAGGACTCAAATAATATGCTTTTTAACCCAGTCCCACACAAATGCTCACC
ACGGGCTGGACCTATGCTACGTTCCTCATGTATGTTATTGTCTTTTACGC
TTCTTCACATTCTTCAACCTCAAAACTCCCTCCATGTAGCTTGAGAGACG
GGCTCATTTGAGTGCTAGTCAGGGCCTTGCAGCTAAAAGGGGAGCCTTTT
TGATGTTCAGTCTGCCTTTCCGTGTTTATGAGGAGTGACCCAGATAGGAA
TCGGTCAGGTTTANACTGCCTCCTCCTCGCCCCTGTCAGAGGGTGACTAG
GGAGAAGAGGCTTTACGCCCGTGAAAACTATGAAAAATCTACCCCTTGTC
TCCCTGGACTATGAGGACTGAGTTCATCCTATGGGGGACTCACTAGCCCT
GGCTTCAGCTACGGAATGAGCTCCTTCCAGCCCGGCTTCGGTTCTGCCGG
GGGATCCAATACTTTTCGCCTCACCACCAAGGCCGTGGTTGTGAATAAAA
TTGAAACCCGAAATGGGAAGCTGGTGCCCGAGTCTTCTGAAGACCTTGTC
AAGTGTAATGTCACCGAAGTTCCTTGCCAGGCGTGAACTCCTGCAGCTGC
CTCAGGGTTTCACGGGTAAAATTTCTGTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_p11.b1 MSMg01no294_p11.b1 CHROMAT_FILE:
MSMg01no294_p11.b1 PHD_FILE: MSMg01no294_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:45 2005
         (236 letters)



>mm_chr15_101669107_101669742
          Length = 636

 Score =  422 bits (218), Expect = e-122
 Identities = 230/234 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtagctgctgaccaacctgtctcttacctcaccaccccagcttctgcctgtaccggct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 aagtagctgctgaccaacctgtctcttacctcaccaccccagcttctgcctgtaccagct 260

                                                                       
Query: 61  ggtgtgacccaggtcgtgtacacggaagccagcttcctcatctccctgggtctcaccctc 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 ggtgtgacccaggtcgtgtacacggaagccagcttcctcagctccctgggtctcaccctc 320

                                                                       
Query: 121 tcaccctgccttgcctacatctgggcttctacccacctcctgagatctgacagcttattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaccctgccttgcctacatctgggcttctacccacctcctgagatctgacagcttattg 380

                                                                 
Query: 181 tctataaaatgtatattctcgttttgggtggctttgtcatctttaaggacatga 234
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctataaaatgtatagcctcgttttgggtggctttgtcatctttaaggacatga 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no294_p11.g1 MSMg01no294_p11.g1 CHROMAT_FILE:
MSMg01no294_p11.g1 PHD_FILE: MSMg01no294_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:45 2005
         (194 letters)



>mm_chr15_101827505_101828098
          Length = 594

 Score =  352 bits (182), Expect = e-102
 Identities = 191/194 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtcccacacaaatgctcaccacgggctggacctatgctacgttcctcatgtatgttattg 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 394 gtcccacacaaatgctcaccacgggctggacctgtgctacgttcctcatgtatgttattg 335

                                                                       
Query: 61  tcttttacgcttcttcacattcttcaacctcaaaactccctccatgtagcttgagagacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 tcttttacgcttcttcacattcttcaacctcaaaactccctccatgtagcttgagagacg 275

                                                                       
Query: 121 ggctcatttgagtgctagtcagggccttgcagctaaaaggggagcctttttgatgttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 274 ggctcatttgagtgctagtcagggccttgcagctaaaaggggagcttttttgatgttcag 215

                         
Query: 181 tctgcctttccgtg 194
           ||||| ||||||||
Sbjct: 214 tctgcttttccgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)