BAC Information

Click to search

BAC

Clone NameMSMg01-295B09
Chromosome15 (Build37)
Map Location 50,082,100 - 50,082,416
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039539, LOC665160
Downstream geneTrps1, LOC100039644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295B09.T7 (MSMg01no295_b09.b1)MSMg01-295B09.TJ (MSMg01no295_b09.g1)
ACCAG423080AG423081
length776756
length of high quality
(start - end)
322 (44 - 365)293 (74 - 366)
definitionCHROMAT_FILE: MSMg01no295_b09.b1 PHD_FILE: MSMg01no295_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:55 2005CHROMAT_FILE: MSMg01no295_b09.g1 PHD_FILE: MSMg01no295_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTAGATTGTACATATCAGTGCAGAATTAAATAGAACCACTACATAA
TGGCATATAGGGTGGCCTTAATGTTCTTTCATCATGCCCTTATCACAGTG
CACTAGGTATCAATGTGCAATAAGGAAATATCTACATATGGTGCATGTGT
TGTAGAATTTGAGCACTTTGCTCAGTGTAATGAGAAACAGCTGGAAATTT
TAAGGTAGAGAAAAGTAGATCTGATTTCTCTTGTCTAAAAGAAAACACTT
TTCTAATTTTAATTACAGACATATATTTTAAAATAAATCCAACATGTAAT
TGTGGGTATTAATATTTTGCTGCCTCACTCCCTGCCATATGCTAGTGTGC
ATCAGCAACTTTATATGCCCCACCATAAGGAAACGCCAGGGCCAAGAAGT
GGGAGTGGGTGGGGAAGGCTATGGCCCCCTCTCCTTCCTCTTCTTCTTTC
CCTCTTTCCGCTTTCTTTTTCTTTAATTTCCTCTTTATTTTTCTGTTTAT
TTAACTTTATTGTATATATTCTTGCTTTTTTATTAATATTTACTCATTAC
CTTTATCCTATTACACAATAATTTCTCTTTTTATCTTCATATCATTTATA
TTAATTTCTTATTTATCTCTTTATCCTATTGTTTCTATCATCTACATTCG
TGTATCTTCTAAACTATTTCTTGCATTTGTTCTGCGTTTTATCATTTTAT
CACCATTATTTTCTCTTCTCTTATAT
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAAGAAGCTAACAACCAAAAAATTCAAA
CAACCCAATCAAAAAATGGCTTATAGAACTAAACCAGAAATTCACAACAG
AGAAATCTCAAATGGCTGAGAAGCACCTAAAGTTCAAAGTCCGTAGTGAT
CAGAGAAATGGAAATCAAGATGACTCCAAGAGTCTACCTTACACCAGTCA
GAGTGGCTAAGAACAAAACCTGAGGTGACAACATGTGTTGGCAATGATCT
GGAAAAAGAAGAAAACTACTCCATTTCATGTGGGATTGAAAACTGGTACA
GCCACTCTAGAAGTCTATCTGGAGGTTCCTCGGAAAATTGGAAATAGATC
TACCTGAAGACCCAGCACCACCACTCCTGGAATAAACCCAAAAGATGTCC
CATCATGACACAAGGGCACATGTTCCACTATGTTCATATGTGGGCCTTGT
TTATAAAAGCCAGAAACTGGAAACAACCTAAATGTTCCATAACAGAAGAA
TGGATACAGAAAATGTGATTTATTTACACAATGGAAATCTACTCAGCTAC
TAAGGACGACGTTATCCTGAGTTTTGCAGGCAAATGGATGGAAGTAGAAA
ATACCATCCTGAGTGAGGTAACTCAGACCCAAAATGATATGTATGGTATG
TACTCAAATAAGTAGATATTAGCAAAAATAAATACATTAATTAATTTAAA
GTACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_b09.b1 MSMg01no295_b09.b1 CHROMAT_FILE:
MSMg01no295_b09.b1 PHD_FILE: MSMg01no295_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:55 2005
         (322 letters)



>mm_chr15_50081896_50082617
          Length = 722

 Score =  598 bits (309), Expect = e-175
 Identities = 315/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttagattgtacatatcagtgcagaattaaatagaaccactacataatggcata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gaattctttagattgtacatatcagtgcagaattaaatagaaccactacataatggcata 462

                                                                       
Query: 65  tagggtggccttaatgttctttcatcatgcccttatcacagtgcactaggtatcaatgtg 124
           |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 461 tagggtggccttaatgatctttcatcatgcccttatcacagtgcacttggtatcaatgtg 402

                                                                       
Query: 125 caataaggaaatatctacatatggtgcatgtgttgtagaatttgagcactttgctcagtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 caataaggaaatatctacatatggtgcatgtgttgtagaatttgagcactttgctcagtg 342

                                                                       
Query: 185 taatgagaaacagctggaaattttaaggtagagaaaagtagatctgatttctcttgtcta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 taatgagaaacagctggaaattttaaggtagagaaaagtagatctgatttctcttgtcta 282

                                                                       
Query: 245 aaagaaaacacttttctaattttaattacagacatatattttaaaataaatccaacatgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aaagaaaacacttttctaattttaattacagacatatattttaaaataaatccaacatgt 222

                            
Query: 305 aattgtgggtattaata 321
           |||||||||||||||||
Sbjct: 221 aattgtgggtattaata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)