BAC Information

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BAC

Clone NameMSMg01-296B23
Chromosome15 (Build37)
Map Location 53,398,374 - 53,398,665
singlet/doubletsinglet
Overlap geneSamd12
Upstream geneThrap6, LOC100039745, Ext1
Downstream geneEG665097, EG621631, Tnfrsf11b, LOC665280, EG383032, Colec10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296B23.T7 (MSMg01no296_b23.b1)MSMg01-296B23.TJ (MSMg01no296_b23.g1)
ACCAG423822AG423823
length760758
length of high quality
(start - end)
318 (46 - 363)293 (75 - 367)
definitionCHROMAT_FILE: MSMg01no296_b23.b1 PHD_FILE: MSMg01no296_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:14 2005CHROMAT_FILE: MSMg01no296_b23.g1 PHD_FILE: MSMg01no296_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGCTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTTAT
TAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAAATTTTCTCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCTGNGTCTCCGCCCCCCCCCCGAAGTTCCTTGA
TCCACTTAGATTTGACGTTAGCACCAGGAGATAAATATGGATCGATTCGC
ATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAAT
GCTGTCATTCTTCCACTGGATGGTGACTTTGTTCTTTATTATAACGAGAA
GATTTTCTTAAGACTAGAAGGTTTATGAAATTCAATTAGAGATAAGGAAA
ATTATCTGAGAAGAATATAACCCAAAGTTTAAAGTTTGATTCAGCTCTCC
TAACATTTATTTCCTGGTTTGTATTAGTAAATATTAGTACCTATTTTGAG
TTAGTTATGACATTTCTACAAATATGTACAATGCATTTTGGTCATGCATT
CCATTGTTCT
CGATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTAGGAGCAAGATCTGCCTTGTATT
CAATGACTCTCCTTAGGGCCTACCCTGGTGCAAACTGCATAGTAAATACT
AAATGACATCTAGGATTGCCATGGCCCATAGTGAGCAATCTCTTGTGTGC
TGGGGTTTAACATATTTTCTCACCAAGGCTTTTATTTAATAAAAAGGGCT
GTGAACTTAAAGTACTAAATTGAGTCTCCAGCATTTGTTACTTTCACGTG
TAGAATTAAACACCTTCATTACCATTGATATTTGAAGTTTGAGGGTTCTT
TGGGGCCATAATTCCTTTTTCTTTTCCCCCCCCCCCACGCGTTCATTCAG
ATCTTCATAGCATCTCAGATACCCAATGGAAAAAATATATAATTCATACA
TATGGAATTTCTGCAAGTGATGGAATTTTTTCTGAAGGATAAGAAAAATA
GAGAAATTAAATGAATGTATAAAATATACATTCAATAATAAACAGCAACT
CAAACAACAAAGCATTAATTTAGAACTTCAGCCTTGTAATTCAGCTGATT
AGAAGAATCCAATACTCTTTTTATTTCATATTGTGTTGTAGCTAATTGAC
AGAGAACTCTGAGTAAGCCAGTAAGTCAATAAGCAGGAAATTGGCAAGCT
CCACTTCTACTGTATCAAGATGACTTGTTTCTACCATTTCCCCAATTGTC
AAGTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_b23.g1 MSMg01no296_b23.g1 CHROMAT_FILE:
MSMg01no296_b23.g1 PHD_FILE: MSMg01no296_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:14 2005
         (293 letters)



>mm_chr15_53398174_53398867
          Length = 694

 Score =  542 bits (280), Expect = e-158
 Identities = 289/292 (98%), Gaps = 1/292 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaggagcaagatctgccttgta-ttcaatgactctccttagggcctaccctggtgcaa 59
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 492 attaggagcaagatctgccttgtatttcaatgactctccttagggcctaccctggtgcaa 433

                                                                       
Query: 60  actgcatagtaaatactaaatgacatctaggattgccatggcccatagtgagcaatctct 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 actgcatagtaaatactaaatgacatctaggattgccatggcccatagtgagcaatctct 373

                                                                       
Query: 120 tgtgtgctggggtttaacatattttctcaccaaggcttttatttaataaaaagggctgtg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tgtgtgctggggtttaacatattttctcaccaaggcttttatttaataaaaagggctgtg 313

                                                                       
Query: 180 aacttaaagtactaaattgagtctccagcatttgttactttcacgtgtagaattaaacac 239
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 312 aacttaaagtactaaattgagtctccagcatttgttactttcatgtgtagaattaaacac 253

                                                               
Query: 240 cttcattaccattgatatttgaagtttgagggttctttggggccataattcc 291
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 252 cttcattaccattgatacttgaagtttgagggttctttggggccataattcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 694
Length adjustment: 9
Effective length of query: 284
Effective length of database: 685
Effective search space:   194540
Effective search space used:   194540
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)