BAC Information

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BAC

Clone NameMSMg01-297C07
Chromosome15 (Build37)
Map Location 25,356,056 - 25,356,705
singlet/doubletsinglet
Overlap geneLOC100040583
Upstream geneLOC666999, LOC100040492, LOC100040499, LOC100040529, 9230109A22Rik, 4930445E18Rik, Basp1, EG432939
Downstream geneMyo10, LOC100040602, Ppia-ps15_175.1, 1810015C04Rik, Zfp622, AK162044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297C07.T7 (MSMg01no297_c07.b1)MSMg01-297C07.TJ (MSMg01no297_c07.g1)
ACCAG424560AG424561
length939727
length of high quality
(start - end)
---650 (78 - 727)
definitionCHROMAT_FILE: MSMg01no297_c07.b1 PHD_FILE: MSMg01no297_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:31 2005CHROMAT_FILE: MSMg01no297_c07.g1 PHD_FILE: MSMg01no297_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAGTAGGTATNTNNNCTGGCTCCAGGCGGGGGGCCCCCCTTTAGACAT
AGACGGNNNNCCAGGGTAGGGGGCCTGATGTTTGTTTTTATTGGTAGGCC
GTGTGTNCGANCCGCCCGCGCCAGAAGGGGGGGGAAGGGGGCCTCCTTAA
AAAAAAATTTTGGCCGGGGNCCCCGGGCCCTTAAAAAAATAACGGNAAAC
CTTCCCAACCTTAAAATTAAAGGGGGGGTTTTTTTCCCCGCCAAAAAAAG
GGGGGGGGGGAGAAATTTTCCCTTTATTTGGGAAAAGGGAAGTTTATTTT
CCCCCCCCNCAAAAAAAAAAAAAAAAATTCCCCCCTTTCCCCCCAAAAGG
GAAAAAATGGGAAAAAGGGGCCTTATAAAAGAAATTTTAACCGGCGGGCC
CATTTTATAAAAAAAAGCGCGGGGGGGTTTTTTTTTCTCCCCCCCGGGGG
GGAGAAGAAAAAAAGAGCCCCCCCCCTTTTTTTCCCCCTCCCCCACAATT
TTTCTCCCCCCTCTTTCTTCCCCCCAAAAAAAGAGGGGGGGGACCCTCTC
AAAAAAAGGGGGGGGGGTTTTTTTTTTAATAACACACCCCCCCCCCCCCG
CTAAAAAAAGATAAAACATATCCCCCCCCCCCCCCCCTTTTTTTTTGGGG
GGGTGGAAGAACACACCCCTCCTCTCGGTGGGGGGGGGGGGGAGGAAGAA
ATAAGTAAACAACTCGCCCCGAGGGCGGGGGGGAGGCGGGTTTTCTCTTT
TTTTTAGAAGGCAGACAAAACACTTTTTTTTTATTTTTTTTTTGTTGAGG
CGAGGAGTAACGTATTTCCCTTCTTCCNCCACGACTNCAAAANTAGAGGT
GACCCTCGCGGGGGCGGGGTTAACCTGTTCTTTTTTCCTCATATATAGCA
AAAAATATAATTCGCCCCCCTGGCGGTGGGGTGGTGGGG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAAGGCAGCTAGAGATAGAG
CCGAGTGTGGTTTTTCTGAGCAGGATGCGTCTGGTGCCCTATATCACAAG
GGAAGCACTGTGTTGCCTGCTATTTAAGAGTCTCCACCCTAAGCATGATG
TCCGTTATGCTTCATCCCTCATTTCCCCGAGGCTGTGTAGCTTTTGCTTC
TTCTCATCGGAGGGAGTGAGGGTTTCCTTGCTTTCTTTTCTCCCACTTTG
CATGGACACAAGCAGAGAATTGAGAGTAGACCAGCACATAGACCATGCAG
TGTTTCAGTTAGTGACATAATGTGTCATGAGACTAAAATAAAATAAATCC
CAGGAGGGATTGAAAGTCCCCCTTATGGAAATTAGAATTGAGTTCTGATT
GTCATCACCTCGGGCAAACATAATGTTTAGAGTAGATGGAAAAAAAAATG
ACTGAATGGATTTGAGTCTATAAAAGGATCTGTGGTGCTTGCCATGTAAG
TAGGGAATGGTTTTATGTTATAGAAATACATGCAACTCTATATATGTGTT
TAAAGGTTTACAGAGTATTTTTCTCACTTATTTGTTGCCTCTAAATAATA
AGACAGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCC
TGAGGTCCTGAGTTCAATTCCCAGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_c07.g1 MSMg01no297_c07.g1 CHROMAT_FILE:
MSMg01no297_c07.g1 PHD_FILE: MSMg01no297_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:31 2005
         (650 letters)



>mm_chr15_25355928_25356977
          Length = 1050

 Score = 1210 bits (626), Expect = 0.0
 Identities = 644/650 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgaaggcagctagagatagagccgagtgtggtttttctgagcaggatgcgtctggtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 778 agtgaaggcagctagagatagagccgagtgtggtttttctgagcaggatgcgtctggtgt 719

                                                                       
Query: 61  cctatatcacaagggaagcactgtgttgcctgctatttaagagtctccaccctaagcatg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 718 cctatatcacaagggaagcactgtgttgcctgctatttaagagtctccaccctaagtatg 659

                                                                       
Query: 121 atgtccgttatgcttcatccctcatttccccgaggctgtgtagcttttgcttcttctcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 atgtccgttatgcttcatccctcatttccccgaggctgtgtagcttttgcttcttctcat 599

                                                                       
Query: 181 cggagggagtgagggtttccttgctttcttttctcccactttgcatggacacaagcagag 240
           |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cggagggagtgaggctttcgttgctttcttttctcccactttgcatggacacaagcagag 539

                                                                       
Query: 241 aattgagagtagaccagcacatagaccatgcagtgtttcagttagtgacataatgtgtca 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 538 aattgagagtagaccagcacatagaccatgcagtgtttcagttagtgagataatgtgtca 479

                                                                       
Query: 301 tgagactaaaataaaataaatcccaggagggattgaaagtcccccttatggaaattagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tgagactaaaataaaataaatcccaggagggattgaaagtcccccttatggaaattagaa 419

                                                                       
Query: 361 ttgagttctgattgtcatcacctcgggcaaacataatgtttagagtagatggaaaaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttgagttctgattgtcatcacctcgggcaaacataatgtttagagtagatggaaaaaaaa 359

                                                                       
Query: 421 atgactgaatggatttgagtctataaaaggatctgtggtgcttgccatgtaagtagggaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 atgactgaatggatttgagtctataaaaggatctgtggtgcttgccatgtaagtagggaa 299

                                                                       
Query: 481 tggttttatgttatagaaatacatgcaactctatatatgtgtttaaaggtttacagagta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tggttttatgttatagaaatacatgcaactctatatatgtgtttaaaggtttacagagta 239

                                                                       
Query: 541 tttttctcacttatttgttgcctctaaataataagacaggctggagagatggctcagtgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tttttctcacttatttgttgcctctaaataataagacaggctggagagatggctcagtgg 179

                                                             
Query: 601 ttaagagcactgactgctcttcctgaggtcctgagttcaattcccagcaa 650
           |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 178 ttaagagcactgactgctcttcctgaggtcttgagttcaattcccagcaa 129


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)