Query= MSMg01no297_l13.b1 MSMg01no297_l13.b1 CHROMAT_FILE:
MSMg01no297_l13.b1 PHD_FILE: MSMg01no297_l13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:13 2005
(698 letters)
>mm_chr15_27458748_27459845
Length = 1098
Score = 1274 bits (659), Expect = 0.0
Identities = 688/701 (98%), Gaps = 6/701 (0%)
Strand = Plus / Plus
Query: 4 gaattcttcagtttttccaccacccaagaaaacactcaatgcagagtcatatgagacaag 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gaattcttcagtttttgcaccacccaagaaaacactcaatgcagagtcatatgagacaag 257
Query: 64 actcccggttcacacatttttgtggggattgaaaactagatgataagagagcttgttgct 123
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 actcccggttcatacatttttgtggggattgaaaactagatgataagagagcttgttgct 317
Query: 124 tgttgtattctgtttactgtgcttccatcttcaaatgaaagcaaatatctagggggagac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 tgttgtattctgtttactgtgcttccatcttcaaatgaaagcaaatatctagggggagac 377
Query: 184 agttttgttctgtaaatttagaactataggagaacctggtgcatttgagctttcacaatc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agttttgttctgtaaatttagaactataggagaacctggtgcatttgagctttcacaatc 437
Query: 244 tgctggatcctatattatggacctggaggttaccattggtggtgcccactagttaccccg 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 438 tgctggatcctatattatggacctggaggttaccagtggtggtgcccactagttaccccg 497
Query: 304 tgctagggaggcagatgtccctagggttcactggccagccactctagttgaaagggtgaa 363
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 498 tgctagggaggcaaatgtccctagggttcactggccagccattctagttgaaagggtgaa 557
Query: 364 atccaggcatacgaagagactgtttcccaaaacagagtggagagtgatagagaagacgcc 423
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 atccaggcataggaagagactgtttcccaaaacagagtggagagtgatagagaagacgcc 617
Query: 424 taaagccaacctctggcctccacatgaacacgtataagcaaagcc------cctccccca 477
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 618 taaagccaacctctggcctccacatgaacacgtacaagcaaagccaaagcccctccccca 677
Query: 478 ccacacatatccaccccctacacacacacctttttatagggtgagcagtgcttaaagaat 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ccacacatatccaccccctacacacacacctttttatagggtgagcagtgcttaaagaat 737
Query: 538 gatgcatgcaagttggccactggcctccacatacacatgtacacacattcacagatatat 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gatgcatgcaagttggccactggcctccacatacacatgtacacacattcacagatatat 797
Query: 598 gcacatacatgtacctgcacatataggacacacacacagaaggagttgtgaaggccaaat 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gcacatacatgtacctgcacatataggacacacacacagaaggagttgtgaaggccaaat 857
Query: 658 agtgcatacatagcttagaaacaaggttctttcagcctttc 698
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 agtgcatacatagcttagaaacaaggttctttcagcctttc 898
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 698
Length of database: 1098
Length adjustment: 10
Effective length of query: 688
Effective length of database: 1088
Effective search space: 748544
Effective search space used: 748544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no297_l13.g1 MSMg01no297_l13.g1 CHROMAT_FILE:
MSMg01no297_l13.g1 PHD_FILE: MSMg01no297_l13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:13 2005
(583 letters)
>mm_chr15_27626079_27627060
Length = 982
Score = 949 bits (491), Expect = 0.0
Identities = 515/523 (98%), Gaps = 1/523 (0%)
Strand = Plus / Minus
Query: 60 tgtaaaaattgtatctgatatgtatgagtggttgcctctgtgtacaccacgtgcatgcct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 tgtaaaaattgtatctgatatgtatgagtggttgcctctgtgtacaccacgtgcatgcct 923
Query: 120 ggtgccaggaaaaaacagtgatggtgccaggtcccatcaggctggaattttagatagctg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 ggtgccaggaaaaaacagtgatggtgccaggtcccatcaggctggaattttagatagctg 863
Query: 180 ccatgtgagtgctaggagccgaaccaggttttctgcaagagcagcgagtcctcgtaatga 239
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 ccatgtgagtgctaggacccgaaccaggttttctgcaagagcagcgagtcctcgtaatga 803
Query: 240 ctgagctgtatctccagccccttcatagggtgtttggtgctcataggaagagagagagca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ctgagctgtatctccagccccttcatagggtgtttggtgctcataggaagagagagagca 743
Query: 300 agagccatgggcattgtgctggtgctgacctacagtgtgcataccagccaaatgcaggca 359
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 742 agagccatgggcattgtgctggtgctgacctacagagtgcataccagtcaaatgcaggca 683
Query: 360 tagagaggctcccatctctagctgtggcatcagttagtacatgagagccctgtagggggt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tagagaggctcccatctctagctgtggcatcagttagtacatgagagccctgtagggggt 623
Query: 420 gggagcatgattttatgggaatgaagagagaactagcaactgagccagggtgagaaggat 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 -ggagcatgattttatgggaatgaagagagaactagcaactgagccagggtgagaaggat 564
Query: 480 caggtggggatgacctcaacaggctcaggacagagactgcatggcctgcttcagctctct 539
| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 563 cgggtggggatgacctcaacaggctcaggacagagactgtgtgggctgcttcagctctct 504
Query: 540 gcagttttgcctgcccataactcccccctgccccctttctttt 582
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gcagttttgcctgcccataactcccccctgccccctttctttt 461
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 982
Length adjustment: 10
Effective length of query: 573
Effective length of database: 972
Effective search space: 556956
Effective search space used: 556956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
