BAC Information

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BAC

Clone NameMSMg01-299A16
Chromosome15 (Build37)
Map Location 96,334,053 - 96,334,504
singlet/doubletsinglet
Overlap genenone
Upstream geneNell2, Dbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894, Arid2, Sfrs2ip
Downstream geneSlc38a1, Slc38a2, LOC667941, LOC546651, Slc38a4, Amigo2, BC038822, LOC100043354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299A16.T7 (MSMg01no299_a16.b1)MSMg01-299A16.TJ (MSMg01no299_a16.g1)
ACCAG425924AG425925
length760812
length of high quality
(start - end)
452 (73 - 524)---
definitionCHROMAT_FILE: MSMg01no299_a16.b1 PHD_FILE: MSMg01no299_a16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:51 2005CHROMAT_FILE: MSMg01no299_a16.g1 PHD_FILE: MSMg01no299_a16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAATCCGCGGAA
TTCATGAGGGAGTTACCAGAATGATGTTTAGCTGGGTATGACGACGCACA
CTTACAATTCCTGACGTGGAAGAAGGAAGGAGGATCTCCAGGTGGGGCTA
GCAAGAGCTATGTGGGGTCTCTCCTCAGGCACACAATAATTCTCTCCTGA
CTCTGCTTCCTTACTACATGTTCTGTACTCGCCATGTTAAGTGCACCCTG
CCCACAAGCATTCAATATCTTCCAATCCCACATACATACTGGTTATGGCT
TGAATTGGAAATGCCCCCTTCCCACCCTCTCAATTCATGTGTTTAAAGCT
CAGTCCCTAGATGGTTGTCATTACTTTTGGAGGTGCCCAAGGATTTCAGA
GGTTGGACCTATCCAGAAAAAAAAGTTAACTAGGGGCCAAGAGCATGTGT
ATTTTATCTTGGTCTATATTTTTTTCTTTAGGCCTATTCCTCACTCCTTT
CCATCCTCTCTCTCTGTCTCTCTGTCTCTGTCTGAGTGTGCCTCTCTCTG
TCTCTCTGCGCGTGTGTCCCTTTCTCTGTCTCTCTCTGCCTCTGTCTCTC
TCTCTCTGCCCCTCTGTCTCTCTGTCCCTCTCTGTGTCTCTGTCTCTGTC
TCTGTCTCTGGCCCTGTCCCCCCTGCTCCCTGCTTCCTGGCCCCCTTGAA
TCGCCAAACTTCCGCTTTGCCCTGACCCCCCTGCCATGAAACCTCCGCCC
TACCTGGCCG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGCCCACTTCTGGTTCCCATGACCACCGATCATCCTG
GGAGGAGCAATCCCCAGGAAGACGGTTCGGGAGGGGTTAGCGGAGCGCGT
CGCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCTCCTAACTCCCCCCC
CCCCCCTTTTTTTCCCTCCTCCCCCTCCCCCCCCCCCCTCCTTTTCCCTT
CTCTCCCCCCTTTCCTCTCTTCTTTTCCCCCCCCCCCCCCCTCTCTCCCC
CCCCCCCCCCCCCTCCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCCTT
TTTCTTTTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTTTT
TTTTTCTCCCCCCCCCCCCCCCCCCCCTCCCCCTCCCCCCCTTCTTCTCC
CCCCCCCCCCCCTTTCCTCTCTTCTCTCCCCCCCCCTCCCTCCCCCCCCC
CCCCCCCCCCCCCTCCCCCCTCCTCCCCCTTCCCCCTCTCTCTCTTCTCC
TCCCCCCCCCCCCCCCCTCCTCCCTCTCTCTCCTCTCCCCTCCCTCCCCC
CCTCTCTCTTTCTCCCCCCTCCCCCCCCCCCCCCCCCCCTCCCCTCCTTT
CTCCCCCCTCCCCCCCTCCCCCCCCCCCCCCCCCCCGTTTTTTCCCCCCC
CCCCCCCTCCCCCCCCTCCTCCTCCCTCCCCCCCTCCCCCCCCCCCCCCC
TCTCCCCCCCCCCTCCCCTCCCCCTCCCTCCTCCCCCCCCTCCCCCTCTC
CTCCCTCTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_a16.b1 MSMg01no299_a16.b1 CHROMAT_FILE:
MSMg01no299_a16.b1 PHD_FILE: MSMg01no299_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:51 2005
         (452 letters)



>mm_chr15_96333853_96334704
          Length = 852

 Score =  760 bits (393), Expect = 0.0
 Identities = 438/453 (96%), Gaps = 2/453 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatgtttagctgggtatgacgacgcacacttacaattcctgacgtggaagaaggaaggag 60
           |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 gatgtttagccgggtatgacgacgcacacttacaattcctgatgtggaagaaggaaggag 260

                                                                       
Query: 61  gatctccaggtggggctagcaagagctatgtggggtctctcctcaggcacacaataattc 120
           |||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 261 gatctcaaggtggggctaccaagagctatgtggggtctctcctcaggcacaaaataattc 320

                                                                       
Query: 121 tctcctgactctgcttccttactacatgttctgtactcgccatgttaagtgcaccctgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcctgactctgcttccttactacatgttctgtactcgccatgttaagtgcaccctgcc 380

                                                                       
Query: 181 cacaagcattcaatatcttccaatcccacatacatactggttatggcttgaattggaaat 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 381 cacaagcattcaatatcttccagtcccacatacatactggttatggcttgaataggaaat 440

                                                                       
Query: 241 gcccccttcccaccctctcaattcatgtgtttaaagctcagtccctagatggttgtcatt 300
           ||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcccctttcccaccccc-caattcatgtgtttaaagctcagtccctagatggttgtcatt 499

                                                                       
Query: 301 acttttggaggtgcccaaggatttcagaggttggacctatccagaaaaaaaa-gttaact 359
           |||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct: 500 acttttggaggtgcccaaggatttcagaggttgggcctattcagaaaaaaaaagttaact 559

                                                                       
Query: 360 aggggccaagagcatgtgtattttatcttggtctatatttttttctttaggcctattcct 419
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 agggggcaagagcatgtgtattttatcttggtctatatttttttctttaggcctattcct 619

                                            
Query: 420 cactcctttccatcctctctctctgtctctctg 452
            ||||||||||||||||||||||||||||||||
Sbjct: 620 tactcctttccatcctctctctctgtctctctg 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)