BAC Information

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BAC

Clone NameMSMg01-302L22
Chromosome15 (Build37)
Map Location 3,948,508 - 3,948,814
singlet/doubletsinglet
Overlap geneLOC100039196
Upstream geneLOC674207, LOC666163, EG666167, Sepp1, LOC100039139, Ghr, LOC223278, Fbxo4, AW549877
Downstream geneOxct1, Plcxd3, C6, LOC100039214, 4930455B06Rik, C7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-302L22.T7 (MSMg01no302_l22.b1)MSMg01-302L22.TJ (MSMg01no302_l22.g1)
ACCAG428550AG428551
length765770
length of high quality
(start - end)
670 (38 - 707)307 (383 - 689)
definitionCHROMAT_FILE: MSMg01no302_l22.b1 PHD_FILE: MSMg01no302_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:27 2005CHROMAT_FILE: MSMg01no302_l22.g1 PHD_FILE: MSMg01no302_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCTC
ACCTGAGTACCACCAAATAGCAGAGAAGCACCTGAAAAAATGTTCAACAT
CCTTAATCATCAAGGAAATGCAAATCAAAACAACACTGAGATTAGACTTC
ACTCCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTG
GCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTGGGATTGCA
AGATTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTG
GACATAGTACAATTTTCCAATCCATAGTATTGGATCCCGCAATACCTCTC
CTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAAGAACACATGCTC
CACTATATTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAAGAAC
CAAGATGCCCCTCAACATAGGAATGGATACAGAAAATGTGGTACATTTAC
ACAATGGAATACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCT
AGGCAAATGGATGGACCTGGAGGGTATCATCCTGAGTGAAGTAACCCAAT
CACAAAGGAACTCGCACAATATGTACTCACTGATAAGTGGATATTAGCCC
AGAAACTTAGGCTACCCAAGATATAAGATACAACTTGCCAAACGCATGAA
ATCCAAGAAGAATGAAGACCAAAGTGTGGACACTTTACCCTTTCTTAGAA
ATGGGAACAAAATAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAATTTTAGAATTATGGGAGGCACTAGGAA
GGAAAATTAAAGGAGTATTATCTGATGTGAGATACTGAAGAAGAGGCTCC
TCAAGAAATGGTAGTGGCACCTAAATGATGGTAAAATTGGCCAAAGGAGA
GTAATAGTTGCTCAGCCAGAAGCCAATCAAGAGAGAGAAAACACATGATG
TCCAGCATAGTGCTAAACACCTCAAGGTTCAGACTCGGGCAAGTGGTGAG
CTAAAATCCTGAGTAGAATAGCAAGTCTTTGCTAAGAAAAGCGAATGGGG
CAAGGCCTCATGTTATTGTGAACATACAACATTCAACTTATGGAATTATG
AAGCATTAGAATGACAGTGTATCTTTAAGAAGAAGAAAGCTCTGAAGAGC
AAGAGTCACAGGTAGAGGAAATAGCTGTACTCGTGGGACGGTTTAGATCT
TTCTGGAGAGCCCATGCCCATAGTTTACTGGGTGGCAGTAAGTCACTGGT
TCACTTCAGAAAAATGCCCTGGAGCTCCATTTTGTAAAACTTTAAAGAAA
AACAGAAAAATCCTCTAAGGCAGTGGTTCTCAACTTTTCCAATGCTGTGA
CCTTTTAATAATCTACTCATGTTATGGTGACCTGCTGCAGGATATATTAA
AAAGAATGGCAAATTCCCATGCTACACCCAGCCACTCTCAGGTCTCACCT
TCCAGTTCTTATCTTGTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no302_l22.g1 MSMg01no302_l22.g1 CHROMAT_FILE:
MSMg01no302_l22.g1 PHD_FILE: MSMg01no302_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:27 2005
         (307 letters)



>mm_chr15_3948308_3949014
          Length = 707

 Score =  555 bits (287), Expect = e-162
 Identities = 302/307 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaacttatggaattatgaagcattagaatgacagtgtatctttaagaagaagaaagctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaacttatggaattatgaagcattagaatgacagtgtatctttaagaagaagaaagctc 260

                                                                       
Query: 61  tgaagagcaagagtcacaggtagaggaaatagctgtactcgtgggacggtttagatcttt 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 261 tgaagagcaagagtcacaggtagaggaaatagctgtactcgtggaacggttcagatcttt 320

                                                                       
Query: 121 ctggagagcccatgcccatagtttactgggtggcagtaagtcactggttcacttcagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggagagcccatgcccatagtttactgggtggcagtaagtcactggttcacttcagaaa 380

                                                                       
Query: 181 aatgccctggagctccattttgtaaaactttaaagaaaaacagaaaaatcctctaaggca 240
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgccctggagcgccattttgtaaaactttaaagaaaaacagaaaaatcctctaaggca 440

                                                                       
Query: 241 gtggttctcaacttttccaatgctgtgaccttttaataatctactcatgttatggtgacc 300
           |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 441 gtggttctcaacttttccaatgttgtgatcttttaataatctactcatgttatggtgacc 500

                  
Query: 301 tgctgca 307
           |||||||
Sbjct: 501 tgctgca 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)