BAC Information

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BAC

Clone NameMSMg01-303B06
Chromosome15 (Build37)
Map Location 85,406,647 - 85,596,999
singlet/doubletdoublet
Overlap geneWnt7b, LOC100042240, Ppara
Upstream geneArhgap8, 3110043J09Rik, Phf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745
Downstream gene2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523, Cerk, LOC100042300, Tbc1d22a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303B06.T7 (MSMg01no303_b06.b1)MSMg01-303B06.TJ (MSMg01no303_b06.g1)
ACCAG428772AG428773
length732756
length of high quality
(start - end)		684 (49 - 732)245 (77 - 321)
definitionCHROMAT_FILE: MSMg01no303_b06.b1 PHD_FILE: MSMg01no303_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:53 2005CHROMAT_FILE: MSMg01no303_b06.g1 PHD_FILE: MSMg01no303_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:40:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,596,687 - 85,596,999)(85,406,647 - 85,406,888)
sequence
CTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCATCCTACCATTTTTAGTAGAATTTTGGATTCCTTGTTCA
CCAGGGACATCAATCTTTTGTTTTACTTGTTCATGATGCCTTCATCTACT
TTTATTTCCGGATGAATTCTGGGATCTGTCTTCATCTCTTTGATTTTCTA
GGACTGTATGCAACCTGTATTATCTCTTCCCGAGACACTTGATCCAATTC
TCCAGTGAGTCATTTGGTGCAGGGCTACTTGGGCGATATATTTCTTCTGG
AAATGGGTTTTTGAAAGGCCATGGAATGCAAGTGATTTGTCCTTTCTACC
CGTGCTGTTTACTGGTGTAGATGTGTTCCTAGTGCTCCTTTATTGCCTGT
TTATGTCTGTAGAACTTGTAGTGATGTCTCCTCTCATGACAAATGTTAGG
GATTTGTTCCCCCAATTAGCCAGGCTTTATTTACCACCTTAAATAAATAA
ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAGCCAAA
TTGTTCATTGATATTTTTTCTCTTTCTTTCCATCTGGTATTGACTTTTTA
TTTTCTCTTTCTTTCCATCTGGTATTCTGACAACCCCTTTCCTCTTCAAT
CCCTCTCCTTTCCCCTGCTTTACATTAGATTTAATTTGTTTGCCTTTTTC
TAGTTTCCTAGAAAATTTATTGTGACTCTGTA

CCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGGACGTGGGAGGT
GACACTATAGAATTTTCAAAAAAAGTCTCTTGGCCAGGTCTCCAAGATCA
GGCGGTGCCCACGGGCCCTGCGCCCTGCCTGGGGAGGCCTGATACTCTCC
ACCCCAGGCGATGCCTCCGTAGCCAGGGCTGCCCGCCGGGCCTGGAGCGC
TCCCTCTGCCTGGACCTTGTAATTATGTTCCACAGCCGGGGAAACCGCGG
GCCTCTCAGCATCTGGCTGCGGTTGCGAACTTTTGTTTCAAGATGCGCGA
CTATTTATAGAAGGAAAATTGGTTGGATAGTAATTTCCTAGGAGCTGGAG
GAGAAATTGGTCGTGTCTTTATTAACAGGGGTGGGGGGCGGGGCAATTTA
TCAAGACTGTGGCCGCGGCGAGGGGAGGGGGTGGTGCACGTATTTGTTTA
TCTCCATTTCTTTTTCTTTATATTTCCTCCCTCTCTATCCTTCTTTTTTT
TTTTCTTACTACCCCATCTACCACCCACATTACCTACTTTCTCTCCGCCT
CTTGCCATAGATTTTCCCGCCCCCTTTTTTCATCCCACACCCTTTTTTTT
ACCTCTTTTCTTTACTCTCCTTTTCCCTTCCTCTATATTTCCTCTCCTCA
CTTTTCTCTCCCCACCCTCCATTTATTTCTTTTTTTTTGTACCTCTCTCT
TCTCTTTCTCCTTCATCTCCTCTTCCTCTCATATTTCCACTTTATATTTT
TTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_b06.b1 MSMg01no303_b06.b1 CHROMAT_FILE:
MSMg01no303_b06.b1 PHD_FILE: MSMg01no303_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:53 2005
         (684 letters)



>mm_chr15_85596687_85597770
          Length = 1084

 Score =  590 bits (305), Expect = e-172
 Identities = 311/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccatcctaccatttttagtagaattttggattccttgttcaccagggacatca 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gaattctccatcctaaaatttttagtagaattttggattccttgttcaccagggacatca 254

                                                                       
Query: 65  atcttttgttttacttgttcatgatgccttcatctacttttatttccggatgaattctgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 atcttttgttttacttgttcatgatgccttcatctacttttatttccggatgaattctgg 194

                                                                       
Query: 125 gatctgtcttcatctctttgattttctaggactgtatgcaacctgtattatctcttcccg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gatctgtcttcatctctttgattttctaggactgtatgcaacctgtattatctcttcccg 134

                                                                       
Query: 185 agacacttgatccaattctccagtgagtcatttggtgcagggctacttgggcgatatatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 agacacttgatccaattctccagtgagtcatttggtgcagggctacttgggcgatatatt 74

                                                                       
Query: 245 tcttctggaaatgggtttttgaaaggccatggaatgcaagtgatttgtcctttctacccg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73  tcttctggaaatgggtttttgaaaggccatggaatgcaagtgatttgtcctttctacccg 14

                        
Query: 305 tgctgtttactgg 317
           |||||||||||||
Sbjct: 13  tgctgtttactgg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space:   723876
Effective search space used:   723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no303_b06.g1 MSMg01no303_b06.g1 CHROMAT_FILE:
MSMg01no303_b06.g1 PHD_FILE: MSMg01no303_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:40:53 2005
         (245 letters)



>mm_chr15_85406447_85407091
          Length = 645

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttggccaggtctccaagatcaggcggtgcccacgggccctgcgccctgcctggggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttggccaggtctccaagatcaggcggtgcccacgggccctgcgccctgcctggggag 260

                                                                       
Query: 61  gcctgatactctccaccccaggcgatgcctccgtagccagggctgcccgccgggcctgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcctgatactctccaccccaggcgatgcctccgtagccagggctgcccgccgggcctgga 320

                                                                       
Query: 121 gcgctccctctgcctggaccttgtaattatgttccacagccggggaaaccgcgggcctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 gcgctccctctgcctggaccttgtaattatgttccacagccggggaaaccgcgggcctcg 380

                                                                       
Query: 181 cagcatctggctgcggttgcgaacttttgtttcaagatgcgcgactatttatagaaggaa 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 381 cagcatctggctgcggttgcgaacttttgtttcaagatgcgcaactatttatagaaggaa 440

             
Query: 241 aa 242
           ||
Sbjct: 441 aa 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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