BAC Information

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BAC

Clone NameMSMg01-303I15
Chromosome15 (Build37)
Map Location 87,394,179 - 87,394,626
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042309
Downstream geneAW049604, LOC100042329, LOC100042340
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-303I15.T7 (MSMg01no303_i15.b1)MSMg01-303I15.TJ (MSMg01no303_i15.g1)
ACCAG429105AG429106
length772740
length of high quality
(start - end)
---448 (264 - 711)
definitionCHROMAT_FILE: MSMg01no303_i15.b1 PHD_FILE: MSMg01no303_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:29 2005CHROMAT_FILE: MSMg01no303_i15.g1 PHD_FILE: MSMg01no303_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:41:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGG
AATTCTCTCCTCATCCAACCAGAATATTGCCTATCGTCGATTCTTAGAAG
ACACAAATTAATATGTATGCTTTACCCTTCTATGACATTCCATGTATCTC
TGAACATTTATTGTCTAGCATATGACCATATNTGATGAGAATAGCTGCTT
ATATGACTGAATGAATCTCTCTATGTGGCTCCAGATGCACTGATTCGACA
GAGAGAACCTTGACTGAGCACCTCATAATTCTCTGTGACTAGTGCGATGG
ACTGATCTGTCAGCATACCATCTGGACGTTGTTAATAGACTCGCAAGTCC
TCCGAAACAACTCACACTGCTCCTATTTGTTGTCCCGTCGCACGAACCCC
TCAGATCTCCCAATTTTATTCGACAAATATTTCTAGCACAATATAATACA
AAGGCATGCTAACTGCGCCTTTGATTTTCAATTACGCTTAGGAGAATTTT
GTGCTAACAGATCTCTTATGATTAATCCAGTTTCCGGAGATTCCATGCGC
AGATAGCCGTTTACTTTCCATCCTTTAAGATGTGACCTCTAGATCACCTC
CACAGACCTGGCTTGAATCCCACCTAGCTTTTGTGCTTCCCATTACAGAG
TGCTGCAACTCTGCATCTGAATACTATCCACTTGGAACTTTCCATGGTAA
CCACACACTAGCAGAGTGTGCATGCTTCCTTAGCTAAATTTCTAACTAGA
TTCTTTCCTTTTAATTACTTAG
GACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTATAGGTCTGTATTCGAAAAACTACTG
ATGGACGTCTAGTCAATCCCCTGAATCGCCCCTTGATCATTCCTTAGATT
TTGACTTTATATACTACCTAGTAATCATTCGTCAAGTTGATGAGTGCTGT
GTTCCGCTGCCCCTCATGTTCTTTACGTAACGCAGTATCCAAAGAGTTAG
AAGACTCAGTCACAAGGCTGTCACAAGGCTGTCATTCTGGGCTGACCCTC
TGGGTGGTACTCTGAGTATCTCATCTCTAATCTCAAAAACTGCAAGACTT
ATGCTGTCATCGCCATATGCTAAAACCATCATGGCCCAATGTTGGATGAG
CCATGGTCCTCCCAGCAAGGCCAACCTCTGTTAGGACCCTTCTGCAGTAA
GAGATGGAGGTTCCAGCATGCTGTGCAGAATTCGATGGCCATCATGCAGC
TGTGGCATTAGGCTGGCCCCACCAGCCGCTGTGAATTCCTATCAGCCTAT
GTGAGTCTTTCTTGCCCTGCCCTGTTGGCCATGTCTACTCTGCCCCTCAT
CCCTCATCTTGATTCTAAGCCCAAGTTCACTCCTTCCACCTGTTCCAGCC
CCCCTCTACCTCATCTGTGTTCTAACCTGCTCCTCCCTTTCCATGGGACT
TCTCGAGGTCATCACTGACCTTTCATTGGCCATTTCCAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no303_i15.g1 MSMg01no303_i15.g1 CHROMAT_FILE:
MSMg01no303_i15.g1 PHD_FILE: MSMg01no303_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:41:29 2005
         (448 letters)



>mm_chr15_87393979_87394826
          Length = 848

 Score =  828 bits (428), Expect = 0.0
 Identities = 443/448 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggctgtcacaaggctgtcattctgggctgaccctctgggtggtactctgagtatctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 aaggctgtcacaaggctgtcattctgggctgaccctctgggtggtactctgagtagctca 260

                                                                       
Query: 61  tctctaatctcaaaaactgcaagacttatgctgtcatcgccatatgctaaaaccatcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctctaatctcaaaaactgcaagacttatgctgtcatcgccatatgctaaaaccatcatg 320

                                                                       
Query: 121 gcccaatgttggatgagccatggtcctcccagcaaggccaacctctgttaggacccttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcccaatgttggatgagccatggtcctcccagcaaggccaacctctgttaggacccttct 380

                                                                       
Query: 181 gcagtaagagatggaggttccagcatgctgtgcagaattcgatggccatcatgcagctgt 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagtaagagatggaggttccagcgtgctgtgcagaattcgatggccatcatgcagctgt 440

                                                                       
Query: 241 ggcattaggctggccccaccagccgctgtgaattcctatcagcctatgtgagtctttctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcattaggctggccccaccagccgctgtgaattcctatcagcctatgtgagtctttctt 500

                                                                       
Query: 301 gccctgccctgttggccatgtctactctgcccctcatccctcatcttgattctaagccca 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccctgccctgttggccatgtccactctgcccctcatccctcatcttgattctaagccca 560

                                                                       
Query: 361 agttcactccttccacctgttccagcccccctctacctcatctgtgttctaacctgctcc 420
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 ggttcactccttccacctgttccagcccccctctagctcatctgtgttctaacctgctcc 620

                                       
Query: 421 tccctttccatgggacttctcgaggtca 448
           ||||||||||||||||||||||||||||
Sbjct: 621 tccctttccatgggacttctcgaggtca 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)