BAC Information

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BAC

Clone NameMSMg01-305H08
Chromosome15 (Build37)
Map Location 14,269,373 - 14,269,798
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666686, LOC239338, LOC666708
Downstream geneLOC674819, LOC100040024, LOC100040033, LOC100040046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-305H08.T7 (MSMg01no305_h08.b1)MSMg01-305H08.TJ (MSMg01no305_h08.g1)
ACCAG430422AG430423
length1,3361,282
length of high quality
(start - end)		422 (481 - 902)722 (88 - 809)
definitionCHROMAT_FILE: MSMg01no305_h08.b1 PHD_FILE: MSMg01no305_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:25 2005CHROMAT_FILE: MSMg01no305_h08.g1 PHD_FILE: MSMg01no305_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:45:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCTTTTNNNNNNNATCATTGGCGCTAAGACTCCTATGGGAGAGGATC
CGCGGAATTCAATATGGCAGCAGAGCCCAGTAAGAGATCAGCTTTCTCAA
TCTGGTTTCTCATTAGATCTTTTAACTGTCTTTATGCAAGAAAAGATTCT
TATCAAGATCTGATTTTCTCACAGCATCCAAGCATTCTGTGTCAGCAGAA
ATCAAACATATTTTTATCTTTGTGTGTGTCTATTGACATGATGAACTCAT
AATGATGGGTAGAATATTTATTATCAAATGACTTCATGATATATTTATGT
ATTTATATAAGAAGACAGAAAGACACTCCTTTTGTTCACCTGATTATACT
GACATATTTGTACAAACATAACAAAAATAGAAAATAATTTAATAATAATT
CATAACACCTATATTTCAATCTAATAACTGGAATTCAATATTTATGATGT
GGTTTTAACTTTTTTTTTTAACCCCCCCTAGAATGAGCATGCATTGAACA
CAAAAATTAAAGTGTATTGAAACTTAACTGTTAAGATAGAGCATCACTAT
ATTCTTGGGCTGTTACTTGGAACCCTGGTCTCCTGAAGATGAAGACGTTG
TTATACCATTATAATTGGTTTGTCTTACTCAATAGTATGTAATTCTTGGG
AGCAGAAGTCTGCAAACAAGTTTTATGCCTTGCTTATTTTCTTTGCCCTA
ATTATTTTCTTTGAGATTCATGCATATATTTTCCCGAATTTACTAGCTTG
TTTGCTTTCTTCAAATATTCCCTTATACAAAAATATGAACTAAGTACTCA
TTTTGCTAATTTCCTTTGTGTTAGTTGGCATTTTGTTTGTCTTGTAATTT
CAGTCTTGACACTGTTTTGTAGTGTGACTTTGAGACTGAATTTTTATGAA
CTTGAGGATATTAATTCCTAGATAGAAATTTCAGATGGATAGTCACTTTC
GTATTTAGCTTTTTACTCTTATTTTTCCACTCTAAAATAATAAAATTTCA
ATTATTCCCTAAACAATTCAGAATAACATTATCTTGGCATTATTACTTGG
ATCCAAACGTTTTTTTTTCAGGGAAGCCGGATTTCTTTTTTACGGGTGGG
TTTCATTTCAAACCAATTTGAATACCCTAACAAATTTGGCATAAAAACCT
TTTATTGTGGATTTAGGGGAAAAATATATTTGGACCTTCTAAATTTGCCA
TATTTCGGGATTTCTGAAACCTGAAAAAATTTTGCGTATAAAAAACCGCC
CTCTGCTGATGCGCTAAAAATTTTATCCACCACTTTCGTTTTTTTTNTTT
CTTNCCCGAAGCGAGGCTAAACAAAGATAGAATCTT

NCCCTTCTTTNNNNNATCTAGGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTGTTTACTCTGATCCCTGT
TTATTAATGGGGTTATCTGATTTTCTGGTGTCCACCTTCTTGAGTTCTTT
ATATATATTGGATATTAGTCCCCTATCTGATATAGGATAGATAAAGATCC
TTTCCCAAACGGTTGATGGGCTTTTTCTCTTATTGATGGTGTCTTTTGCC
TTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTCTATTCTGATCTT
AGAGCACATGCCATTGCTGTTCTATTCAGGAATTTTTCCCTTGTGCCCAT
ATCTTCGAGGCTTTTCCCCACTTTCTCTTCTATAAGTTTCACGGTCTCTG
GTGTTATGTGGAGTTCCGTTATCCACTTAGATTTGATCTTAGTACTAGGA
GATAGAAATTTAGCATTTTCTACATGATGTCTGCCACTTGTGCCAGCACC
ATTTGTTGAAAATGCTGTCTTTTTTCCACTTGATGGTTTTAGCTTTTTTG
TCAAAGATCAAGTGACCATAGGAGGGTGGGTTCATTTCTGGGTCTTCAAT
TCTATTCCATTGGTCTACTTGTCTGTCTCTATACCATTACCATGCAGTTT
TTATCACAATTGCTCTGTAGTACAGCTTTAGGTCAGGCATGGAGATTCTA
CCAGAGGTTCTTTTATCTTCGAGAATAGTGTTTGCTATCCTAGGTTTTTG
TTATTGCAGATGAATTTGCAAAATGCCCTATCTTATTTATTGAAGAATTG
AGTTGGATTTTTAGTGGGGTTTGCATTGAATCTGGAGATTGCTTTTGGCA
AGATAGCCATTTTTACTATACAGATACTGCCTATCCATGAACATGGGAGA
ACTTTCCATCTTCTGAGAACTTCTTTAATTCTTTCTTTCAAGAAATGAAG
TTCTTTTTTTAAAATTTTTTTCTTTTTTAAAACAAAAAGAGGGGATTTTT
TTTTTTTTGGGACTTTGGAGGGGGGGGGCTCCCCCAAACTTTTTTATTTT
TCTTNTTTTTGGGGTGTGTTTTTTTTTGGGGCCCTTATACCNCGAGAACA
TCATTTTAATTCCTTCTTTTTCCCTTTCCTTTTCCTTTTTCTTTACATTT
ATNATAATAATCCACTTTTTCTTCCTAACCAATAATAAATGTATCCATCT
TGATTNCTTTTTACTTCTACCNTTTTTTTTTCNTTTNTTTTCTTCTTTTA
TCTTTATTCTTAACTTCCTTTTTTGTCTACTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no305_h08.b1 MSMg01no305_h08.b1 CHROMAT_FILE:
MSMg01no305_h08.b1 PHD_FILE: MSMg01no305_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:45:25 2005
         (422 letters)



>mm_chr15_14269173_14269998
          Length = 826

 Score =  727 bits (376), Expect = 0.0
 Identities = 412/426 (96%), Gaps = 4/426 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaatgagcatgcattgaacacaaaaattaaagtgtattgaaacttaactgttaagataga 60
           ||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||
Sbjct: 626 gaatgagcatgcattgaacgcaagtattaaagtgtattgaaacttaactgttaagataga 567

                                                                       
Query: 61  gcatcactatattcttgggctgttacttggaaccctggtctcctgaagatgaagacgttg 120
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||
Sbjct: 566 gcatcactatattcttgggctgttacttggaaccctggtctcctaaaaatgaagatgttg 507

                                                                       
Query: 121 ttataccattataa----ttggtttgtcttactcaatagtatgtaattcttgggagcaga 176
           |||||  |||||||    ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 506 ttatatgattataatgtgttggtttctcttactcaatagtatgtaattcttgggagcaga 447

                                                                       
Query: 177 agtctgcaaacaagttttatgccttgcttattttctttgccctaattattttctttgaga 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 agtctgcaaacaagttttatgccttgcttattttctttgccctaattattttctttgaga 387

                                                                       
Query: 237 ttcatgcatatattttcccgaatttactagcttgtttgctttcttcaaatattcccttat 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttcatgcatatattttcccgaatttactagcttgtttgctttcttcaaatattcccttat 327

                                                                       
Query: 297 acaaaaatatgaactaagtactcattttgctaatttcctttgtgttagttggcattttgt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 acaaaaatatgaactaagtactcattttgctaatttcctttgtgttagttggcattttgt 267

                                                                       
Query: 357 ttgtcttgtaatttcagtcttgacactgttttgtagtgtgactttgagactgaattttta 416
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 266 ttgtcttgtaatttcagtcttgacactgttttgtagtgtgacttcgagactgaattttta 207

                 
Query: 417 tgaact 422
           ||||||
Sbjct: 206 tgaact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 826
Length adjustment: 9
Effective length of query: 413
Effective length of database: 817
Effective search space:   337421
Effective search space used:   337421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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