BAC Information

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BAC

Clone NameMSMg01-307C07
Chromosome15 (Build37)
Map Location 21,977,915 - 21,978,271
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh12, LOC100040351
Downstream geneEG545091, Cdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-307C07.T7 (MSMg01no307_c07.b1)MSMg01-307C07.TJ (MSMg01no307_c07.g1)
ACCAG431598AG431599
length739744
length of high quality
(start - end)		362 (41 - 402)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no307_c07.b1 PHD_FILE: MSMg01no307_c07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:07 2005CHROMAT_FILE: MSMg01no307_c07.g1 PHD_FILE: MSMg01no307_c07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:48:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAGAATGATTACATCATTTATGGGCACTGAGCCTAAATTAGCATGAAGTT
ATGATTCAACACTCAAATTATATTTCATTATCTGAAGTTCTAGAGGAATG
TTTGACATTTGAAGGTCATAAGAATGAAAAACGATGAAGGAGACTGCTTT
GCAGTCATAGGTGAGTGCAAAGCTGTGATTTCTTCTGCCACCTTCTCTCA
TTTATAGGATAGTGGAGATTGTTGTGTTTCAATGCTTCTTGTTATTTGTG
ACTATTTCCTGCTTCTTTACTTTTCTTTAGAAAAGGAGAGTAAATGCAAA
TTCTCCTGTCAGAGTCCACACCCCTCTGTTACATTACTCATAGCTGAATT
CTGTATAAATGCCCCCCCCCGAATAAAGTGAATTTTTCAGCAAAGCTTAA
TGCAAACTTGGAAAAAAATAAGGAAAACATGCAGACCTGCACTCTTACTT
CTCACTAATGATTTTGTGATTCAAACATTCTGCATGCTATCACAAGTAGC
TCACGTATGCAAGATTATTAAGAAGAAATTGCCCCTAATATGTGTTACTG
AAGCACTCTCATGTCCTAACATGCTATGTAGCAATGATATTATATCTATA
AACTTTCTTTACAGGCTCCCTGGAACAAACTCGTTCAATAGATCTTTCCA
TCTCAGCCCCTCATCCCAAGCGCTCGTATCCGATATGCA

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTATTTCAGGAATTCTCAGGCAGACCTTCCTTCTTGCT
TACCTTTTTTGTGTCTGTGGGATGTCTCTTGGGTACTCAGCTTTATGATT
AATGCCTACTTATCAGTGAGTACATACCATGCATGTCCTTTTGGGCCTAG
TTTATCTCAATCAGGATGATGTTTTCTAATCCCATCCATTTGCCTGCACA
TGTCATGATGTCCTTGTTTTTAATATAATATTTCATTGTGTAAATGGACC
ACATTTTCTGTATTCATTCTTTGGTTGAGGAACATCTGGGTGGTTTCCAG
CTTCTGGCTATTACTTTATTTGTTGCTACGAACACACTGGAGCATGTGTC
TTTGTGGTATGTAGGAACACCCCCCGTGTTTATGCCCAGGAGTAGTATAG
CTGGGTCTTTAGGTAGAACTATTTCCAGTTTTCTGAGAACCTGACATATT
ACTATCCAGAGTGGTTGTACAAGTTTGCAATCCCACCAACAATGAAGGAC
TATCCCCTTTTTTTTCCTACATCTTCACCAGTGTGTGCTGTCCCTTGATT
TTTTTATCTTAGTCATTCTGATGGGTATAAGGTGGAATCTCTGATTTGTT
TTGATTTGCATTTTCCTGATGATTAAGGGTCATCACTAAGGATAACTAAG
GATGTTGAAAAATTTTTTAAGTGCTTCCTGCCCATTAGAAATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no307_c07.b1 MSMg01no307_c07.b1 CHROMAT_FILE:
MSMg01no307_c07.b1 PHD_FILE: MSMg01no307_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:07 2005
         (362 letters)



>mm_chr15_21977711_21978472
          Length = 762

 Score =  652 bits (337), Expect = 0.0
 Identities = 352/357 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaagaatgattacatcatttatgggcactgagcctaaattagcatgaagttatga 64
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagaatgaataaatcatttatgggcactgagcctaaattagcatgaagttatga 264

                                                                       
Query: 65  ttcaacactcaaattatatttcattatctgaagttctagaggaatgtttgacatttgaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcaacactcaaattatatttcattatctgaagttctagaggaatgtttgacatttgaag 324

                                                                       
Query: 125 gtcataagaatgaaaaacgatgaaggagactgctttgcagtcataggtgagtgcaaagct 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 gtcataagaatgaaaaacgatgaaggagactgctttgcagtcataggtgagtgcaaggct 384

                                                                       
Query: 185 gtgatttcttctgccaccttctctcatttataggatagtggagattgttgtgtttcaatg 244
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 385 gtgatttcttctgccaccttctctcatttataggataatggagattgttgtgtttcaatg 444

                                                                       
Query: 245 cttcttgttatttgtgactatttcctgcttctttacttttctttagaaaaggagagtaaa 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 cttcttgttatttgtgactatttcctgcttcattacttttctttagaaaaggagagtaaa 504

                                                                    
Query: 305 tgcaaattctcctgtcagagtccacacccctctgttacattactcatagctgaattc 361
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgcaaattctcctgtcagagtccacacccctctgttacattactcatagctgaattc 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space:   265809
Effective search space used:   265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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