NNCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATC
CGCGGAATTCTCAGATATTCCAAAAACAATGAAGGAATAGTTTTATATTT
TTTATTATATTTAACTGTTGATAGAAGGTATATTTCATAACAATTGAGTG
CAACAATAAATTGTGATCAGCAGCCAGTTTTATTCATAAAACTCTGACCC
CAGCTTTATCAGGAAGCATATCCATATTGTATTCCTAAGCATCAGAAATA
TAAACAAAACACTGAAGCAGAAATATATGCGAAGGAGAATTAAGATATAA
AGGTTATATAAAATCAATGATAGAAAGCTGCAAGGTGAACAATCCAATGT
TTGCTTTGTAAATAGACTTACTATTATTATCAACGTCATTGTCAAGTAGG
AAATTCACAGAAAACTTACTGCAGACTCCAGAAAAAAAAAAAAGTGAAAA
AACAACAAAACAAATATGGTGAATGTTAGATTGTAGCCAATTGGAATACA
AACCAATCACCAGATGAAGAGATCAATGGTTTGTGGCTTGGATTTCATTA
AACAAAGAAAGCTAGCCACTAACATGCCTGTAGCTGCTTCTCAAGTGTAG
TAAGCACTGACTAAAATTGTTCTTTGGAATTCTATTAACAAGAGAACATG
TGTATGCTTCCTGGGAAGGAAAGAAGTTTATTTGAAGCAAACAAATGCAA
CCAAGTACTT

NNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGCTACACA
GAGAAAAACCTGTCTCAAAAAACAAAAAAAGAAACAAACAAAAACAAACA
AACAAATAAAAAAAAACAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGAAAGAAAGAAAGAAGAAAGAAAGAAAGAAAGAAGAGAT
AAATAGCTATCAAGGTGGATATATGCAAACCCTGTAGTTCCAACAGTTTC
ACAATTAACATATATGTGTACCTTCTGCATTAACCGGATCGTCTTCCTTT
CCTATAGGTTTTATCTTGTCACCTCATCTTCCTCTCTGTCTCTCTCTACC
CCTCTCTAAAACTCTCAATCTGCCTTCTTTTGCCAGCGCCCAATTATAGG
CTCTAGCCTTATCTTTCACCTGCCCTCACCTGAGTACAGATAGCAATCTA
TAGACACCAATAACCAAAAATGGGTACGGTGTTTAAAAGAGAATACAGAC
AGAGAAATCTTTAATGTCTGAGAAACATTTAAGTAAATGTTCGACACCCT
GAGTCATTAATGAAATGCAAATCCAGCTAACTCTGAGATTATATCCATCA
GGATGGCTAAGGTCAGAATCTACTGGGACAGCCCATCTAACAAGGATGTG
TAGTAATGGGA

Query= MSMg01no307_f08.b1 MSMg01no307_f08.b1 CHROMAT_FILE:
MSMg01no307_f08.b1 PHD_FILE: MSMg01no307_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:48:21 2005
         (662 letters)



>mm_chr15_47633641_47634700
          Length = 1060

 Score = 1214 bits (628), Expect = 0.0
 Identities = 649/660 (98%), Gaps = 9/660 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattctcaga---tattccaaaaacaatgaaggaatagttttatattttttattatat 62
           ||||||||||||   ||    |||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattctcagagaata----aaaaacaatgaaggaatagttttatattttttattatat 262

                                                                       
Query: 63  ttaactgttgatagaaggtatatttcataacaattgagtgcaacaataaattgtgatcag 122
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 263 ttaactgttgatagaaggtatatttcataacaattgagtgcaacaataaattgtaatcag 322

                                                                       
Query: 123 cagccagttttattcataaaactctgaccccagctttatcaggaagcatatccatattgt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 cagccagttttattcataaaactctgaccccagctttatcaggaagcatatccatattgt 382

                                                                       
Query: 183 attcctaagcatcagaaatataaacaaaacactgaagcagaaatatatgcgaaggagaat 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 attcctaagcatcagaaatataaacaaaacactgaagcagaaatatatgcgaaggagaat 442

                                                                       
Query: 243 taagatataaaggttatataaaatcaatgatagaaagctgcaaggtgaacaatccaatgt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 taagatataaaggttatataaaatcaatgatagaaagctgcaaggtgaacaatccaatgt 502

                                                                       
Query: 303 ttgctttgtaaatagacttactattattatcaacgtcattgtcaagtaggaaattcacag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttgctttgtaaatagacttactattattatcaacgtcattgtcaagtaggaaattcacag 562

                                                                       
Query: 363 aaaacttactgcagactccagaaaaaaaaaaaagtgaaaaaacaacaaaacaaatatggt 422
           ||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||
Sbjct: 563 aaaacttactgcagactccaggaaaaaaaaa--gtgaaaaaacaacaaaacaaatatggt 620

                                                                       
Query: 423 gaatgttagattgtagccaattggaatacaaaccaatcaccagatgaagagatcaatggt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaatgttagattgtagccaattggaatacaaaccaatcaccagatgaagagatcaatggt 680

                                                                       
Query: 483 ttgtggcttggatttcattaaacaaagaaagctagccactaacatgcctgtagctgcttc 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgtggcttggatttcattaaacaaagaaagctagccactaacatgcctgtagctgcttc 740

                                                                       
Query: 543 tcaagtgtagtaagcactgactaaaattgttctttggaattctattaacaagagaacatg 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcaagtgtagtaagcactgactaaaattgttctttggaattctattaacaagagaacatg 800

                                                                       
Query: 603 tgtatgcttcctgggaaggaaagaagtttatttgaagcaaacaaatgcaaccaagtactt 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgtatgcttcctgggaaggaaagaagtttatttgaagcaaacaaatgcaaccaagtactt 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1060
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1050
Effective search space:   684600
Effective search space used:   684600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)