BAC Information

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BAC

Clone NameMSMg01-308O09
Chromosome15 (Build37)
Map Location 68,921,742 - 69,085,129
singlet/doubletdoublet
Overlap geneKhdrbs3
Upstream geneZfat1, LOC100041000, EG665945, EG633752
Downstream geneLOC383050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-308O09.T7 (MSMg01no308_o09.b1)MSMg01-308O09.TJ (MSMg01no308_o09.g1)
ACCAG432844AG432845
length789713
length of high quality
(start - end)
103 (121 - 223)292 (74 - 365)
definitionCHROMAT_FILE: MSMg01no308_o09.b1 PHD_FILE: MSMg01no308_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:20 2005CHROMAT_FILE: MSMg01no308_o09.g1 PHD_FILE: MSMg01no308_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:50:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,921,742 - 68,921,844)(69,084,841 - 69,085,129)
sequence
TTTTTTTCGTCCCTCTCCTTTCCTTTCCACCTTCTTCCNTTTTCCNNNNC
AATCTATAATTGCGGCCGCTAATAGAATTCTATTCCACACGGATCCGNGG
AATTCATTTTTTGCGAGAACCCTCTTCCTCCTCCCATTGGCTTTGTGGAC
ACATTGCCATTTCCAGAGGACCATTTAATAGTTAAGTGAACTATTTAAAG
ACAGCGCGCTTAGGTGTTTTGTTTGCGTCCACGGTCTTTTCTGACCTTCT
CACTGTTTTAACAGAGCAGGTTGCCAGACTGCATACTCTGCCTGATCTGC
TTCCTTTTTGAAGTATCTTTGCTTCTTGTTTATATAGTATATGATGTCTT
TGATATTATAGCTCGATTTTTTTTCTCCACTCTCATCTTTATATTTTAAT
CCATTCTTTTTTTTTTTTACCCCCCCCCCACTATATTATTAATCAGTTTC
ATTAAGGTTATTATACCCCCCCCCTCCCCCAAATAAATGAAGGTCCCTCA
GGTCCCATTACCGACGTAACTCCTCTCTGCTCCCAGGTAGTCTATTACGG
TGCCACGCAGTCCACGATCCCTTTCTCCCTATGCCCAATGGTTATTGCGT
TATCCACCTTATTTGACTGTTCCCTTCCCCCTATTGCTAGTCCACAATTA
CCTTCTGTCTCTTATTCTTATCTATTCATGACGACCCTTGCCCTTTGACC
CCCCCTCCCACCTTTCTTTCCTACTGCCCTCCTTCATTCTCTTTTACCCT
TCCCTCCCCCTCTTTATTTCTCTCCCACTTCCTCTCACC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTACCCCGAGAAATTCATAACCTATGTCATAGCCTATGA
AGCTAATGCATCGTCACAAGGACCCTTGCAGTCTCCATAGAAAGGTAAGA
CAGGTTATAATGCAAAAAGACCAGCAAAGTGGAGAAGGAACTAGCTTGGA
TTCATCCAGATATATTCCCCAAGAACTCAAGATGATAGCCTTAGAAAAGT
AAAGAATAGTGATAACAAATCCAGTACACAAAACATCCATCTGGAAGACT
TTTAAAATGCCTCTGGGCCCTCTTAGGAGTAAAGTCGTCAATATATGAAG
TACGATAAGATGTTTTGGATTTGCGCCTGGCTTAAGAAAGAACATTCTAA
GAGTTGTACCATTCAACCCCACCCCGCCTTTGTTCTAGTTTGTTGTCTGT
TGATGAAATGAACACCATGGCCACAAAACAACTTATGAGCGGAAACTGTT
TATTTCATCTTACACTTCTCCATCAACATCCATCACTGAGGGCAGTCAGG
ACAGGAACCTGAGCAGAAATCACAGAGGAATGAAGCTTGTTTCTTTACTC
TCTGAATATCTCATAGACTAAAGCCCAGACTACCTGCCTAGGGTCCATGC
TACCCCTAGTGGGCTGGGCACTCCCACATAAATTATCATTTAAGACAATC
TCTCAGAGAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no308_o09.b1 MSMg01no308_o09.b1 CHROMAT_FILE:
MSMg01no308_o09.b1 PHD_FILE: MSMg01no308_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:20 2005
         (103 letters)



>mm_chr15_68921542_68922044
          Length = 503

 Score =  192 bits (99), Expect = 7e-54
 Identities = 102/103 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcttcctcctcccattggctttgtggacacattgccatttccagaggaccatttaata 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 cctcttcctcctcccattggctttgtggacacattgccatttccagaggatcatttaata 260

                                                      
Query: 61  gttaagtgaactatttaaagacagcgcgcttaggtgttttgtt 103
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttaagtgaactatttaaagacagcgcgcttaggtgttttgtt 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 103
Length of database: 503
Length adjustment: 8
Effective length of query: 95
Effective length of database: 495
Effective search space:    47025
Effective search space used:    47025
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
Query= MSMg01no308_o09.g1 MSMg01no308_o09.g1 CHROMAT_FILE:
MSMg01no308_o09.g1 PHD_FILE: MSMg01no308_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:50:20 2005
         (292 letters)



>mm_chr15_69084641_69085332
          Length = 692

 Score =  513 bits (265), Expect = e-150
 Identities = 283/289 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcataacctatgtcatagcctatgaagctaatgcatcgtcacaaggacccttgcagtc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 489 attcataacctatgtcatagcctatgaagctaatgcatcgtcacaaggagttttgcagtc 430

                                                                       
Query: 61  tccatagaaaggtaagacaggttataatgcaaaaagaccagcaaagtggagaaggaacta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 429 tccatagaaaggtaagacaggttataatgcaaaaagaccagcaaagtggagaaggaaata 370

                                                                       
Query: 121 gcttggattcatccagatatattccccaagaactcaagatgatagccttagaaaagtaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gcttggattcatccagatatattccccaagaactcaagatgatagccttagaaaagtaaa 310

                                                                       
Query: 181 gaatagtgataacaaatccagtacacaaaacatccatctggaagacttttaaaatgcctc 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gaataatgataacaaatccagtacacaaaacatccatctggaagacttttaaaatgcctc 250

                                                            
Query: 241 tgggccctcttaggagtaaagtcgtcaatatatgaagtacgataagatg 289
           ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tgggccctcataggagtaaagtcgtcaatatatgaagtacgataagatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)