BAC Information

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BAC

Clone NameMSMg01-311F01
Chromosome15 (Build37)
Map Location 47,104,192 - 47,159,748
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039438
Downstream geneLOC665130, LOC100039485, LOC100039493, Csmd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-311F01.T7 (MSMg01no311_f01.b1)MSMg01-311F01.TJ (MSMg01no311_f01.g1)
ACCAG433852AG433853
length731742
length of high quality
(start - end)		564 (45 - 608)290 (78 - 367)
definitionCHROMAT_FILE: MSMg01no311_f01.b1 PHD_FILE: MSMg01no311_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:07 2005CHROMAT_FILE: MSMg01no311_f01.g1 PHD_FILE: MSMg01no311_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:52:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,159,189 - 47,159,748)(47,104,192 - 47,104,481)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAGGAGAAAAGAAAAAGTGATACAGATTCATTTTCTTTTGTAACC
TATAAACTTTTACAGTAGAAAACCCCCATGGGTGCGTGTTTTTACCATGT
TCACACTGAGATTTTTACAATGAAGCTATAAAGTATCTATAAAATCTGTC
CCTGAATCTATTTGTATATAAGTATGTCAGGTTAGGGTGTAGAATGTCCA
AAGTTCAACAAATGTACAAGCAAACCTTCTTATGCATTTCACATGCAACA
CATTTGTATAAAAGATGGCCTCAGAAATACAAAATCCTGCCTTAGACAGT
ATAAAATGTAATCATGGATTGTTGTTCAATAAACCACCTTTCCAATTTCA
GAAATAGCATCCACAACCAAATTTTCTAAGAATTATTTAGTTAGGGGATA
GGCTCTTGTTCCAATTGTAGAATGCTAATTATGGACAATGCAGGGCTAGT
TTTCTTATCTTCTCCAAGATAAACATTTTAAATAGCATTTGATTCACTTG
GACCACTGTGTGTGTTAAACATGCACCTGGCCCACTAGCCACTGGGCTTC
TTTCATATGGACCAGAGTGACCAATCTGTAATATTTTAATGATATAAATC
CTAATTCTACTTGACTTAATTACTTCATAATCTGGGAAATTTTACTTCAA
TCCATTTTAACCGAAAATAAATATTTATTTA

ATTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAACCAATAAAACTCTGTAAT
CATGATATAAAATGTATTAGGCTCAGATTTGGTAAGGCACAATAATGAAT
ATTTTCAGGTAATTCATCAGAAATATATTCAAATGGAATCGACAGTACTA
CAAATTATTATAAGCACACAAGAAAAATGAATTAGTTTTTCATAATTTCC
AAACATGAGACATTGTTGATTTACTCTACCTCTCTCTGCTTTTCAAACTG
CCTATTAGAGGATTATCTCTCTAGGCTAGGTGAGCCAGCTCTTCTGCCCT
GAGGTTACAGTCTTCTTAGCTGNTTCACCGCACCCCACCCAGAAGGTATG
GAGTCCTGGGCACCATTTCCCAGGCACATTCCTAAAAAAAAAGAAAAAGC
TACCAGAGCCTGAGAGCATATTTCTTTTTTATTTTGGGGAAAGCTGTGTC
CTATCCGATTAAGGTTCACAGCTGTAGGAATCTATACCTTTCTCTGATTG
GTCCCTTAATTTTACCTGCAGCTTTATATTTAGCAGCTTTTTAAAATTCC
CATTAATTACCCCATTTTTGAGTGTACCATCTGTTTTCTCCTGAGTCTGC
CTTATAATAATAGAGCCAACCAAAACTCCCTAAAGCTATGATATCCCTTA
AGTAAGACATAACTGTAAGTAATTAATGGACATATTGTCCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no311_f01.b1 MSMg01no311_f01.b1 CHROMAT_FILE:
MSMg01no311_f01.b1 PHD_FILE: MSMg01no311_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:07 2005
         (564 letters)



>mm_chr15_47158985_47159948
          Length = 964

 Score = 1052 bits (544), Expect = 0.0
 Identities = 556/560 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaaggagaaaagaaaaagtgatacagattcattttcttttgtaacctataaact 64
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 764 gaattctaaggagaaaagaaaaagtgatacagattcattttcttttgtaaactataagct 705

                                                                       
Query: 65  tttacagtagaaaacccccatgggtgcgtgtttttaccatgttcacactgagatttttac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 tttacagtagaaaacccccatgggtgcgtgtttttaccatgttcacactgagatttttac 645

                                                                       
Query: 125 aatgaagctataaagtatctataaaatctgtccctgaatctatttgtatataagtatgtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 aatgaagctataaagtatctataaaatctgtccctgaatctatttgtatataagtatgtc 585

                                                                       
Query: 185 aggttagggtgtagaatgtccaaagttcaacaaatgtacaagcaaaccttcttatgcatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 aggttagggtgtagaatgtccaaagttcaacaaatgtacaagcaaaccttcttatgcatt 525

                                                                       
Query: 245 tcacatgcaacacatttgtataaaagatggcctcagaaatacaaaatcctgccttagaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tcacatgcaacacatttgtataaaagatggcctcagaaatacaaaatcctgccttagaca 465

                                                                       
Query: 305 gtataaaatgtaatcatggattgttgttcaataaaccacctttccaatttcagaaatagc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gtataaaatgtaatcatggattgttgttcaataaaccacctttccaatttcagaaatagc 405

                                                                       
Query: 365 atccacaaccaaattttctaagaattatttagttaggggataggctcttgttccaattgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 atccacaaccaaattttctaagaattatttagttaggggataggctcttgttccaattgt 345

                                                                       
Query: 425 agaatgctaattatggacaatgcagggctagttttcttatcttctccaagataaacattt 484
           ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agaatgctagttatggacaaggcagggctagttttcttatcttctccaagataaacattt 285

                                                                       
Query: 485 taaatagcatttgattcacttggaccactgtgtgtgttaaacatgcacctggcccactag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 taaatagcatttgattcacttggaccactgtgtgtgttaaacatgcacctggcccactag 225

                               
Query: 545 ccactgggcttctttcatat 564
           ||||||||||||||||||||
Sbjct: 224 ccactgggcttctttcatat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no311_f01.g1 MSMg01no311_f01.g1 CHROMAT_FILE:
MSMg01no311_f01.g1 PHD_FILE: MSMg01no311_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:52:08 2005
         (290 letters)



>mm_chr15_47103992_47104681
          Length = 690

 Score =  545 bits (282), Expect = e-160
 Identities = 288/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaaccaataaaactctgtaatcatgatataaaatgtattaggctcagatttggtaagg 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aggaaccaataaaactctgtaatcatgatataaaatgtattaggctcatatttggtaagg 260

                                                                       
Query: 61  cacaataatgaatattttcaggtaattcatcagaaatatattcaaatggaatcgacagta 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 cacaataatgaatattttcaggtaattcatcagaaatacattcaaatggaatcgacagta 320

                                                                       
Query: 121 ctacaaattattataagcacacaagaaaaatgaattagtttttcataatttccaaacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctacaaattattataagcacacaagaaaaatgaattagtttttcataatttccaaacatg 380

                                                                       
Query: 181 agacattgttgatttactctacctctctctgcttttcaaactgcctattagaggattatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacattgttgatttactctacctctctctgcttttcaaactgcctattagaggattatc 440

                                                             
Query: 241 tctctaggctaggtgagccagctcttctgccctgaggttacagtcttctt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctctaggctaggtgagccagctcttctgccctgaggttacagtcttctt 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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