BAC Information

Click to search

BAC

Clone NameMSMg01-313J21
Chromosome15 (Build37)
Map Location 99,153,724 - 99,154,100
singlet/doubletsinglet
Overlap geneFmnl3
Upstream geneOlfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b
Downstream geneTegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313J21.T7 (MSMg01no313_j21.b1)MSMg01-313J21.TJ (MSMg01no313_j21.g1)
ACCAG435492AG435493
length1,2361,262
length of high quality
(start - end)
---390 (74 - 463)
definitionCHROMAT_FILE: MSMg01no313_j21.b1 PHD_FILE: MSMg01no313_j21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:31 2005CHROMAT_FILE: MSMg01no313_j21.g1 PHD_FILE: MSMg01no313_j21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGGTANNNNNNGGGCACTGGGCGCTAAGACTCACTAAGGGAGXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGCTTGCCTACCTCTCGTTCCCTAAATAA
AAGTATTTTGTTTCTTCCCTTTCTTGAACCCCCTATCTTCCACTAAAAAC
TCCTATTTCCTTTTCCCCCCACCACCCCCCTCGTATCCGCGCCTATTCCT
TCCTTCTCTCNATCCTCTCCCCTCTCACACTTCCCCCTCCCCCCTCTTCC
TCTTACCCTCCCCTCCTTCTCTCTAATCCCCTTCCTCACCCTCCCTTTCT
CATTCCTCCTCTTCCTCTCCTCTTACATCCCTTCCT
NNNNGGGCTGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGACTCCCAGGGGAACTGACTATAGAG
CCTTCAGCCCATTCTTCCCTCAATGCTGCTGTCTGCCTGATAGGAGACAT
ATGAGAACACAAGCAACCAGGTGCATACTCTTCCGAGGCTCATTACGGAA
AAGGAGGAGGCCTTCCAGCGCCGATGCCACCTGGAGCCAAGTGCCCGGGG
CCTGGAATCCATGGGCGGCGAGGCCCTAGCCAGGGTAGGCCCTACAGAGT
TGACTGAAGGCATCCCACCCTCTGACTTGGACCTGCTGGCTCCAGCCCCA
CCTACTGAGGAGACTCTTCCTCTGCCTCCTCCACCAGCTCCCCCTTTGCC
TCCGCCCCCTCCTCCACTACCAGGTAACTGGGACTTCCAAGCCGGGAGGG
TTTTTTTTTTTGCCCCCCCAGNACTGTAGTCAGAAATGTCTAAAATAGGA
AACAGCTGGGAAATAGCATCATTTGAGGGCCAGGAGGATATCAAGTCAGG
ATGAGAGAGAGGGCTAAGGGAGGACCAGTATTTGTGGGAAATAGGAATGC
TGGGAGCAGATTCTGCTTCAAGGATCTCTGAGGTGCTGCTCTCAATTATT
CCTCTGAAGGCCGCCAAGCTGAAGGTTAAACTGACAAGAGAAACTCCGTC
AGGGACTAGTGCTGGCTCTCCCCTTCAGTATACTTCTAGGATCAACTTGA
CCAGAGCTTCCATAGCACTCTTCTCTGGGTCTCAAAGGAGAGGGAGGCAG
GCAGAGTTTGGGTAGCCTAGAGTCTTAGGACTGTGGGTCACGATGGCATT
TATTCTTCCCAGACAAGTGTCCCCCTGCCCCACCTCTCCCTGGTGCTGCT
CCTTCTGTGGGGTTGACAGTGGGCCTGTCAGGTGAGTGTCCTTCAGGCTC
TGGGCAGGGCTATTGAAGTTTTTCCCTCCACTCTTACTCCAATCGGGCCC
CCCTCCAAAAACCTACCCTTTTCCTTCCAGAAACCTTTCAGACCAAGTTC
CCGGTTGGCACCTTCTCATGGGAGGACCTCAAAACCCTCCTCAAAAATGG
GTCTGGTCCTCTCGGAACTTCTGTAGTAAAACAATTTTTATTGGTATCCG
GTTTTTCTTTCCCCCTCTTCTCCACTTTCTCTGCTTATCCCGCTCCACTT
TCTTTCTTTACTTCTCATTCTCTACTCCATAATTACTTCTCATCCTAGCT
TTCTTCATTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_j21.g1 MSMg01no313_j21.g1 CHROMAT_FILE:
MSMg01no313_j21.g1 PHD_FILE: MSMg01no313_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:31 2005
         (390 letters)



>mm_chr15_99153611_99154400
          Length = 790

 Score =  706 bits (365), Expect = 0.0
 Identities = 374/377 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgactcccaggggaactgactatagagccttcagcccattcttccctcaatgctgctgtc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 490 tgactcccaggggaactgactatagagccttcagcccattcttccctcaatgttgctgtc 431

                                                                       
Query: 61  tgcctgataggagacatatgagaacacaagcaaccaggtgcatactcttccgaggctcat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 430 tgcctgataggagacatatgagaacacaagcaaccaggtgcatactcttcggaggctcat 371

                                                                       
Query: 121 tacggaaaaggaggaggccttccagcgccgatgccacctggagccaagtgcccggggcct 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 taaggaaaaggaggaggccttccagcgccgatgccacctggagccaagtgcccggggcct 311

                                                                       
Query: 181 ggaatccatgggcggcgaggccctagccagggtaggccctacagagttgactgaaggcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ggaatccatgggcggcgaggccctagccagggtaggccctacagagttgactgaaggcat 251

                                                                       
Query: 241 cccaccctctgacttggacctgctggctccagccccacctactgaggagactcttcctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 cccaccctctgacttggacctgctggctccagccccacctactgaggagactcttcctct 191

                                                                       
Query: 301 gcctcctccaccagctccccctttgcctccgccccctcctccactaccaggtaactggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 gcctcctccaccagctccccctttgcctccgccccctcctccactaccaggtaactggga 131

                            
Query: 361 cttccaagccgggaggg 377
           |||||||||||||||||
Sbjct: 130 cttccaagccgggaggg 114


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)