BAC Information

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BAC

Clone NameMSMg01-313L17
Chromosome15 (Build37)
Map Location 91,453,558 - 91,453,889
singlet/doubletsinglet
Overlap genenone
Upstream geneCpne8, LOC100042462, LOC100042471, EG667682, Tcea1-ps1, Spn-ps, Kif21a, EG635871, Abcd2, LOC545126, Slc2a13
Downstream geneLrrk2, Muc19, Smgc, LOC100042529, Cntn1, Pdzrn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313L17.T7 (MSMg01no313_l17.b1)MSMg01-313L17.TJ (MSMg01no313_l17.g1)
ACCAG435578AG435579
length1,2701,262
length of high quality
(start - end)
763 (129 - 891)332 (502 - 833)
definitionCHROMAT_FILE: MSMg01no313_l17.b1 PHD_FILE: MSMg01no313_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:46 2005CHROMAT_FILE: MSMg01no313_l17.g1 PHD_FILE: MSMg01no313_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGAAATTNNNNNNNNATCATTGGGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCACCTGAGGAATACCCTTTGACAGACAAGCACCTGA
AAAAATGTTCAACATCCTTCTTTATCAAGGAAATGCAAATCAAAACAACC
CTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAACATTCAGG
TGACAGCAGATGCCCGCATGGATGTGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGG
TTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCT
CCTAGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCT
CCACTATGTTCTTAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAA
CCCAGATGCCCCTCATCAGAGGAATGGATACAGAAAATGTGGTACATCTA
CACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTACGAAATTCC
TAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAT
TCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCC
CAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACACATGAA
ACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTAGAA
GTGGGAACAAAACACCCTTGGAAGGAGTTACAGAGACAAAGTTTGGAGCT
GAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCACCC
CATAATCAGCATCCAAACGCTGACACCATTGCATACACTAGCAAGATTTT
ATCCGAAGGACCCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCT
AGCAAAAACAGAAGTGGATGCTCACAGTCAGCTAATGAATGGATCACAGG
GCTCCCAATGGAGGAACTAGAAAAAGTACCCAGGGAGCTAAAGGGAACTG
CAACCCTTAAGGGGGAACACCTTTTGGAACTATCAGAACCCCGAAGACCT
TGATCTTACTGGCAAAGGATCAAAAAAGGCCCAATTTGCCTCCCTGGAAA
AAAAGCCCTTGGAATTTCAACCTTTATTGCCCCCAAAGGGAAAAAAAGCC
CCCAAAGAGAAGGTGGGGGTTGTAATTTTTCCTTCTTTCCTCTCCTTCCT
CTTCTTTTTCTCTCTCTCCA
NNNCCGCATGATGGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCACACATGACAGTACAACCCAAAGGTGGA
AAAGGTAGAAGAATATTAGACAGCCGCCATTTTTTGCAGACATTGGAGGA
ATCAGCCATCAGTCAAAGGTCAAGATTNCCTCCACACAGGAGAGAACTCC
TCTTTTCTTGTGCCTAATCACCCCACACTGAATTCCACAATGAGGACTCC
AGCCCTTGTCTGCCTTGTACCTGCACTGGTTACAGAAACCAAAGCCCAGT
AGCAATACCAGTAACTTGAGTCATGAACAACTATTACAGCTACATTCAAG
TGTAACTAGTGTTCTTAGCACTGCAACAAATTACATATCTGAGCCTGTTT
TATAAAGGGGAAGACAAGGGAATATCTAATTTCTTCAGCTTTTATGGTGT
TTTTTTTATACCCACCCACCAAGTTTGCTATTTCCCGCAAAAAAAAGGGA
CTGTCATTGTTCATTTAGAAAGGAGAAATGTAAGTAGCTGAATTCCTCAT
ACTGCATAGCAAGAAACTGTGGCCACAAACTAAGGTAGTGTTTACTATAT
AGTTGCATCATAGTTACCAAAAGTAGGTAAACTGTTGGAGCAGATGCTAT
AGAGAAATGAGAAAGCTGGTTTGACTTAGACACAGAAGTTTTGAGAGCTC
ACCATACAGAATGTGAGTTCAAAGCAGTGTCTCCTGACACCGTTTTAGCA
CTTTAGAGTTACGCTGCTATCAATGTGATTTTTACACACCTCAATGCGGT
ACCCATAAGCATATTTATCAAACAATGTCAAGTAAACCTTATATATTAAG
TGGTTTCTTCATACTGGTTTGTGATGGATGATAAACCATCCAATGAGTAG
CAAAACCAGTTGTGACTGATACAAGTTCTCAAATGAGTAAGAGTAGCCCA
CCCTCCATATGTGCATTATGCGTAAAATTTTTTTAACTTTAAATTTCCCC
GGAACACAATCCCATAAAACCCAGTCCCCTTTGGGGTTTGAAGAACCCCT
TGGTTTCAGGTAACCCCACTTTAAAAAAAAAGAGTTTGGGAAAAAAGGGC
CCCCCAAAAAGGTTTTTAAAAGGTTGGAAGGGAGGTACTTTTATTTTTTT
GGGGGTAATTCCCCCTCCCCTTTGGGGGAGGAAAAAACCCCCCTCTTATT
CGGTGGAAAAGGCTTCCACCCTATTAAACCATATTTCCCCTCACCCCACA
ATAAATTTGTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_l17.g1 MSMg01no313_l17.g1 CHROMAT_FILE:
MSMg01no313_l17.g1 PHD_FILE: MSMg01no313_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:46 2005
         (332 letters)



>mm_chr15_91453358_91454089
          Length = 732

 Score =  627 bits (324), Expect = 0.0
 Identities = 330/332 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcattgttcatttagaaaggagaaatgtaagtagctgaattcctcatactgcatagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tgtcattgttcatttagaaaggagaaatgtaagtagctgaattcctcatactgcatagca 473

                                                                       
Query: 61  agaaactgtggccacaaactaaggtagtgtttactatatagttgcatcatagttaccaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 agaaactgtggccacaaactaaggtagtgtttactatatagttgcatcatagttaccaaa 413

                                                                       
Query: 121 agtaggtaaactgttggagcagatgctatagagaaatgagaaagctggtttgacttagac 180
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 412 agtaggtaaactgttggagcagatgctatagagaaatgagaaggctagtttgacttagac 353

                                                                       
Query: 181 acagaagttttgagagctcaccatacagaatgtgagttcaaagcagtgtctcctgacacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 acagaagttttgagagctcaccatacagaatgtgagttcaaagcagtgtctcctgacacc 293

                                                                       
Query: 241 gttttagcactttagagttacgctgctatcaatgtgatttttacacacctcaatgcggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gttttagcactttagagttacgctgctatcaatgtgatttttacacacctcaatgcggta 233

                                           
Query: 301 cccataagcatatttatcaaacaatgtcaagt 332
           ||||||||||||||||||||||||||||||||
Sbjct: 232 cccataagcatatttatcaaacaatgtcaagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)