BAC Information

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BAC

Clone NameMSMg01-315K05
Chromosome15 (Build37)
Map Location 51,150,363 - 51,150,681
singlet/doubletsinglet
Overlap genenone
Upstream geneTrps1, LOC100039644
Downstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315K05.T7 (MSMg01no315_k05.b1)MSMg01-315K05.TJ (MSMg01no315_k05.g1)
ACCAG436225AG436226
length759778
length of high quality
(start - end)
320 (46 - 365)317 (76 - 392)
definitionCHROMAT_FILE: MSMg01no315_k05.b1 PHD_FILE: MSMg01no315_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:10 2005CHROMAT_FILE: MSMg01no315_k05.g1 PHD_FILE: MSMg01no315_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTTTATCTCTGTTTCCCATATTTTAATAGGGGTATTTGGTTC
TGTGGAGTCTAACTTCTTGAGTTGTATATATTGGATATTTGTCCTCTATC
GGATGTAGGATTGGTAAAGATCTTTTTCCAGTCTGTTGGTTGTCATTTTN
GTCCTATTNGACATTCTCCTTTGCCTTATAGAAGCTTTGCAATTTTATGA
GGTCCCATTTGTTGATTCTTGATCTTAGAGCATAATCCACTGCTGTTCTG
TTCAGGAACTTTCTCCCTGTGTCCATGTGCTAGGGGCTCTTCCCCACTTT
CTCTTCTATTAGATTCAATGCATCTGGTTTTATGTGGAGTTTCTTGATCC
ATTTGGACTTGAACCCCCCCCCCCACACAAAAAAGTGGAATTGATTTTGC
ATTTCTTCTAAATGTTTGAACTACCCATTTAAACCCAGCCCCAATTTTGT
TGAAAAAATGCTTGCCCTTTTTTCCCCATTAAAAAGGGGTTTTAAACTCC
CTTCCGCAAAGAATTCAAGGGGACCCTTAGGGGGTGGGGGGTTTTTATAT
TCCGGGGGACTTTCCACTCTCTGTACCCCATTGGAATATTAACTTGGCCT
TGGCCATTGGGAACCCCGTAATTCTGTCCGTGTTTTTTTAATCCCCCCTA
TAAAACATTCCTCTTTTAAAAAATATCACCTCAATGTTTTTTATGTCCTA
GATGCTTTT
NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCTGATATAAGGTTACGAGCTCC
ATGGCTTAAAGCAGCCTTTGTCCTCATTCAAGTCTTGATTCTGGGAAGTG
GTGCTAAGTTTTTCATGTCTCTTCCAGGAGGCCCTTTGGGTTTTCCTGAA
TACACAACTTTTGGCAGCCTGCCCTGGCACAACAGAACTCCTCACACATT
AGCTGAGACATCCCCACAGACTTGACCAGAGTAGGCGAGACATCATTTGT
ATTAATATTGTTACAAAATACAGGTTGAAAATAGTTCTCATTCATGTTTC
ACTATAGACTAGTGGGTCTTTTTGAGGGGGGGGTGTTTTGGTTTTCTATT
TGATTTGGAAAGCCCCCCCCTCTCAAAAGAAATATTTATAATTGAACTAT
TTTGTCATAAACATACACGTTTCCTTCTCCCTATTACAGTATATTACCCC
TGTTTGCCCCTCTTCACTATCGTATTCACATTCCTTATTTTTTAAGATAA
CTGCGACTCTCTTGTATCTTTTTACCCCATAATGAATTTTTTTTCCCATG
CCTCTTTTTTTTTTCCCACTCCTAATTATTTTTTCTTCCCTTTTTTTTAT
TTCCCCCCCTTTTTTTTCTGATCTATCCGCTATATTTACTTCTCTCTATC
CCCCTTTATCTCTTTTTATATTACCATTTCCCTTTTCCCCTTGTACTTTT
ACTCCACTACTACACTATCTCTCACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_k05.g1 MSMg01no315_k05.g1 CHROMAT_FILE:
MSMg01no315_k05.g1 PHD_FILE: MSMg01no315_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:10 2005
         (317 letters)



>mm_chr15_51150163_51150881
          Length = 719

 Score =  598 bits (309), Expect = e-175
 Identities = 316/319 (99%), Gaps = 2/319 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttctgatataaggttacgagctccatggcttaaagcagcctttgtcctcattcaagtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttctgatataaggttacgagctccatggcttaaagcagcctttgtcctcattcaagtct 260

                                                                       
Query: 61  tgattctgggaagtggtgctaagtttttcatgtctcttccaggaggccctttgggttttc 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttattctgggaagtggtgctaagtttttcatgtctcttccaggaggccctttgggttttc 320

                                                                       
Query: 121 ctgaatacacaacttttggcagcctgccctggcacaacagaactcctcacacattagctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaatacacaacttttggcagcctgccctggcacaacagaactcctcacacattagctg 380

                                                                       
Query: 181 agacatccccacagacttgaccagagtaggcgagacatcatttgtattaatattgttaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacatccccacagacttgaccagagtaggcgagacatcatttgtattaatattgttaca 440

                                                                       
Query: 241 aaatacaggttgaaaatagttctcattcatgtttcactatagactagtgggtctttttga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatacaggttgaaaatagttctcattcatgtttcactatagactagtgggtctttttga 500

                              
Query: 301 gggggggg--tgttttggt 317
           ||||||||  |||||||||
Sbjct: 501 ggggggggggtgttttggt 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 719
Length adjustment: 9
Effective length of query: 308
Effective length of database: 710
Effective search space:   218680
Effective search space used:   218680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)