BAC Information

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BAC

Clone NameMSMg01-316I07
Chromosome15 (Build37)
Map Location 60,917,452 - 60,918,100
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040266, LOC623048, LOC211832, LOC623094, EG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg
Downstream geneLOC100040323, Myc, Pvt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316I07.T7 (MSMg01no316_i07.b1)MSMg01-316I07.TJ (MSMg01no316_i07.g1)
ACCAG436842AG436843
length735740
length of high quality
(start - end)
691 (45 - 735)649 (75 - 723)
definitionCHROMAT_FILE: MSMg01no316_i07.b1 PHD_FILE: MSMg01no316_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:17 2005CHROMAT_FILE: MSMg01no316_i07.g1 PHD_FILE: MSMg01no316_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAGGCAAATCGGATGGACCTGTAGGGCATCAACCTGAGTGAGGTA
ACCCAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATA
TTAGCCCAGAAACTTAGGATACCCAAGATACAAGATACAATTTGCTAAAC
GCATGAAACTCAAGAAGAACGAAGACCAAAGAGTGGACACTTTGCCCCTT
CTTAGAATTGGGAACAAAATACCCATGGAAGGAGTTACAGAGACAAAGTT
TGGAGCTGTGATGAAAGGATGGACCATCTAGAGAGTGCCATATCCGGGGA
TCCATCCCATAATCAGCTTCTAAATGCTGACACCATTGCACACACTAGCA
AGATTTTGCTGAACGGACCCAGATAGAGTTGTCTCTTGTGAGACTATGCT
GGGGCCTAGCAAACACATAAGTGGATGCTCACAGTCAACTATTGGATTGA
TCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAG
GGATCTGCAAGCCTATAGGTGGAACAACATTATGAACTAACCAGAACCCC
GAAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCC
ATCACTGGAAAGAGAGGCCCATTGGACTTGCAAGCTTTATGTGTCCCAGT
ATAGGGGAATGCCAGGGCCAAAAAGTAGGAGTGGG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAATCATCAGGCTTGGTGGCAAGTGT
CTTTATCTATAAAGAGGGCTCAACAGCCCTTAAGAGAACGTTTTAAAAGA
GAAAATAAAATTTTCATTTTCATAATCATTTGGGTTATTTGGGCTCCATG
AGTGTCCATCCATATGAATTTTAGAATCGAACATATATTTTTACCAAGAA
GACTTGCCTATCATAAAGTAGCCCTGGAGAAAGGCATTCCTGTAGTGATT
GTGCGGAGTTTATACAATGTATGACTATTTTAATAATACTGTTTTGCAAA
CCATGAGGACAACCTACTTTTATTTATTTATATATATTTACACTTATTTC
AATGGTTTTCATAACACAAATTTTCACTTTCATAAAACCAGTTCATTTTT
GACACAACAGTAAAAAAGAAAACCACTCAATAGAAGCTTAGAGAAATACA
ATTACTTTTTTTTAATTAGGTATTTTCTTCATTTACATTTCAAATGCTAT
CCCAAAAGTCCCCCAGACAGCCCCCACACACACACTCCCCTACCCATCTA
CTCCCACTTCTTGGCCCTGGCATTCCCTCGTACTGAGGCATATAATGTTT
GCAAGACCAAGTGGCCTCTCTTCCCAATGATGGCCGAATAGGCCATCTTC
TGATACATATGCGAGGCAGCCTCTAGATGGTCCACCATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_i07.g1 MSMg01no316_i07.g1 CHROMAT_FILE:
MSMg01no316_i07.g1 PHD_FILE: MSMg01no316_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:17 2005
         (649 letters)



>mm_chr15_60917252_60918300
          Length = 1049

 Score = 1170 bits (605), Expect = 0.0
 Identities = 638/649 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatcatcaggcttggtggcaagtgtctttatctataaagagggctcaacagcccttaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatcatcaggcttggtggcaagtgtctttatctataaagagggctcaacagcccttaag 260

                                                                       
Query: 61  agaacgttttaaaagagaaaataaaattttcattttcataatcatttgggttatttgggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaacgttttaaaagagaaaataaaattttcattttcataatcatttgggttatttgggc 320

                                                                       
Query: 121 tccatgagtgtccatccatatgaattttagaatcgaacatatatttttaccaagaagact 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 tccatgagtgtccatccatatgaattttagaatcaaacatatatttttaccaagaagact 380

                                                                       
Query: 181 tgcctatcataaagtagccctggagaaaggcattcctgtagtgattgtgcggagtttata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcctatcataaagtagccctggagaaaggcattcctgtagtgattgtgcggagtttata 440

                                                                       
Query: 241 caatgtatgactattttaataatactgttttgcaaaccatgaggacaacctacttttatt 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 caatgtatgactattttaataatactgttttgcaaaccaagaggacaacctacttttatt 500

                                                                       
Query: 301 tatttatatatatttacacttatttcaatggttttcataacacaaattttcactttcata 360
           |||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||
Sbjct: 501 tatttatatatatttacacttacttcaatggttttcataatataaattttcactttcata 560

                                                                       
Query: 361 aaaccagttcatttttgacacaacagtaaaaaagaaaaccactcaatagaagcttagaga 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 aaaccagttcatttttgacacaacagtaaaaaagaaaactactcaatagaagcttagaga 620

                                                                       
Query: 421 aatacaattacttttttttaattaggtattttcttcatttacatttcaaatgctatccca 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 621 aatacaattacttttttttaattaggtatttttttcatttacatttcaaatgctatccca 680

                                                                       
Query: 481 aaagtcccccagacagcccccacacacacactcccctacccatctactcccacttcttgg 540
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagtcccccagacagcccccccacacacactcccctacccatctactcccacttcttgg 740

                                                                       
Query: 541 ccctggcattccctcgtactgaggcatataatgtttgcaagaccaagtggcctctcttcc 600
           |||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 741 ccctggcattccttcgtactgaggcatataatatttgcaagaccaagcggcctctcttcc 800

                                                            
Query: 601 caatgatggccgaataggccatcttctgatacatatgcgaggcagcctc 649
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 caatgatggccgaataggccatcttctgatacatatgcgaggcagcctc 849


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)