BAC Information

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BAC

Clone NameMSMg01-321A15
Chromosome15 (Build37)
Map Location 98,395,156 - 98,395,555
singlet/doubletsinglet
Overlap geneCcnt1
Upstream geneLOC100042774, D15Ertd682e, Pp11r, Rapgef3, 4930570C03Rik, Hdac7a, Vdr, Tmem106c, Col2a1, Senp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418
Downstream gene4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4, 2810451A06Rik, Spats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321A15.T7 (MSMg01no321_a15.b1)MSMg01-321A15.TJ (MSMg01no321_a15.g1)
ACCAG440117
length726733
length of high quality
(start - end)
---400 (73 - 472)
definitionCHROMAT_FILE: MSMg01no321_a15.b1 PHD_FILE: MSMg01no321_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:41 2005CHROMAT_FILE: MSMg01no321_a15.g1 PHD_FILE: MSMg01no321_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXX
TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATGTCCTCACCTAGCCTCTGAGGGCAC
TCACACACTCTTACCATTCCCTAACCCAAACACAGGCAAAAATAAAGCCA
AGTCCTTTTTTATCCTAAATTTGAAACATGTTTTCTTAAAGACTTTTAAA
AATGTTGCAAAACCTAACTTACATTTGTCTTCTTACTCGGAAAGCTATAT
TTAAATCATGGTTTCTTTTCTAACTTTAAAATAACGAGCCCTAAATTCTA
AAATTAAAATCATAGTTCAATAACAACGACCAATCATAAAGTAGGCAGCT
ACACTCAAACCCAAAGGGATTTCACCATAGAAAATTATACTTACATATCG
ATGAAACTGCCCACAACACTGAATCATGTAGAATCGGTGCATGTATACTA
TAGCAGTATTGATCGTCAGTTGTGAGCTGAAGTGCTCGAGTTAAGGTTCA
TAAGCAGACAATATAATCTCCCCTCAAAGTAACAAATGGCCAAGCTAAAC
AGATGATCCCACAGGGGAGTAAAACTTAACTCTTCCAACCCAACAGCAGA
TTCGTTTCCTTCTCTAATGAAATTAACTGCCAATTGACAACATGTGCTCT
ACCTAATGGGTACTTACTATGAACTTACCGACTGATTAAATAAAACAAGT
ATCAAGCCGTAAATCATTACAAACAAAGCTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_a15.g1 MSMg01no321_a15.g1 CHROMAT_FILE:
MSMg01no321_a15.g1 PHD_FILE: MSMg01no321_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:41 2005
         (400 letters)



>mm_chr15_98394956_98395755
          Length = 800

 Score =  735 bits (380), Expect = 0.0
 Identities = 395/400 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgtcctcacctagcctctgagggcactcacacactcttaccattccctaacccaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgtcctcacctagcctctgagggcactcacacactcttaccattccctaacccaaaca 260

                                                                       
Query: 61  caggcaaaaataaagccaagtccttttttatcctaaatttgaaacatgttttcttaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggcaaaaataaagccaagtccttttttatcctaaatttgaaacatgttttcttaaaga 320

                                                                       
Query: 121 cttttaaaaatgttgcaaaacctaacttacatttgtcttcttactcggaaagctatattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttttaaaaatgttgcaaaacctaacttacatttgtcttcttactcggaaagctatattt 380

                                                                       
Query: 181 aaatcatggtttcttttctaactttaaaataacgagccctaaattctaaaattaaaatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatcatggtttcttttctaactttaaaataacgagccctaaattctaaaattaaaatca 440

                                                                       
Query: 241 tagttcaataacaacgaccaatcataaagtaggcagctacactcaaacccaaagggattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagttcaataacaacgaccaatcataaagtaggcagctacactcaaacccaaagggattt 500

                                                                       
Query: 301 caccatagaaaattatacttacatatcgatgaaactgcccacaacactgaatcatgtaga 360
           |||||||||||||||||||||||||||||||||||||   | || |||||||||||||||
Sbjct: 501 caccatagaaaattatacttacatatcgatgaaactgtgtaaaagactgaatcatgtaga 560

                                                   
Query: 361 atcggtgcatgtatactatagcagtattgatcgtcagttg 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcggtgcatgtatactatagcagtattgatcgtcagttg 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)