BAC Information

Click to search

BAC

Clone NameMSMg01-321M08
Chromosome15 (Build37)
Map Location 61,202,389 - 61,202,698
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC211832, LOC623094, EG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
Downstream geneMyc, Pvt1, LOC100040584, H2afy3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321M08.T7 (MSMg01no321_m08.b1)MSMg01-321M08.TJ (MSMg01no321_m08.g1)
ACCAG440652AG440653
length741740
length of high quality
(start - end)
320 (45 - 364)244 (72 - 315)
definitionCHROMAT_FILE: MSMg01no321_m08.b1 PHD_FILE: MSMg01no321_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:35 2005CHROMAT_FILE: MSMg01no321_m08.g1 PHD_FILE: MSMg01no321_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAATCTCTTCCACCCACATGGGNGGAAAGAAATGGCACATTCTAACA
AGCTGTCCTCTGACCTCCACTCCTGCACAGTGAGATGGTCCTCCCCACAA
TCATACATCCACAAAATAAACAAAATGTAATGAAAGCATGCATATATGTA
TATTCATATTTAAATCTGAAATGATATTTCATTTTCATTTGGAAAATTCT
AGAAATAAGTCAAATATAATGTCAGTATATTAGTTTATCGGCTCGGTTGA
AAGCTCATTCTTGATGTTCCCCCCAAACTCACATTATCCCTTATAAGGCC
TCTATTTATCTTTTTTTACCTCCCCCCCCCCCCAGCATGGCCATTTAATT
TTTATTATTTAAANCCCCCCCCCCAGAAGAAAGAAATGCATAATTAATGA
TTAAAATAGACCAATAGATACAAAGTGAGTCTATACCAACACAAAAACAG
ATCACATTGATTTTGCTCATCAGCTCAACTACCTGACTCCTCCTCTTGTC
AGTAAGTCCCTGCCATATTTATCTGATAGTATGCTTTAGCTACAGCACCT
AACACAGTACTTGGAATTTGGAAAGATCACATCAATCATTGTCCTTTATC
ATGGCAAAAGCATAGATAAAATGATCCTATTCGGCATTCTAGTCCTTTCA
TGGTAAATGGAAACATAGCATTTGTATGCTGGGATTATAAT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGCTGAAAAATTCAGTACCTCCAGAAGAACTGCACTGCT
CTAAATATCTGAGCCATCTCTCCAGCCCCACAGTGAATGTATTTTTTAAA
ACTGTGGGTGGGATTTCCCACAACTCTTTTTTTTTTTTTTCATTTAGAGC
TGAGGACTGAACCCAGGGCTTTGTCTTGCTAGGCAAGTGCTCTACCACTG
ATCTAAATCCTCAACCCAACAGTGAATGTATTTTAAGCCATGGTAAACAA
ATGCTTATTTGTGTCCAGATGTTTTATTTGAAGAGTCACCAAAGGGTTGG
AAGGATGATTCTAATACCTGCCCCACACACTATGAGACCTGTGTGAGCAG
GTGGTGAAAGCTTCCCCCCCCCCGAAAACTGTTGGTGGATTTGACTTGGA
ATTGTTGTAGACATGGGGAAATATCAAGCAGAAAAATGGCCAGAATACAG
GGTGATCACTGAGGAGTCAAACTCAAGTGTAGGCTATTATACTGGAGCCA
GGGTGCCATGCAGGGAAAACTGAGGGAGGGGTACAGAGAGAGACCGCATG
AGAATGACTTGATCCTACACAGGTAAAGAGATGTAACGGACAGAGGAGGA
ATAGGACTATATTTATTTTAACAGGAATGGAATTTTCGACACCTACGTTG
TTCCTCTCTCCCTTTAATTCTCTCTTTTCTTGTCCGCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_m08.b1 MSMg01no321_m08.b1 CHROMAT_FILE:
MSMg01no321_m08.b1 PHD_FILE: MSMg01no321_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:35 2005
         (320 letters)



>mm_chr15_61202184_61202901
          Length = 718

 Score =  499 bits (258), Expect = e-146
 Identities = 299/316 (94%), Gaps = 9/316 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatctcttcc---acccacatgggnggaaagaaatggcacattctaacaagctg 61
           ||||||||||   |||   |||||| |||| |||||||||||||||||||||||||||||
Sbjct: 206 gaattcaatc---tccaagacccacgtggg-ggaaagaaatggcacattctaacaagctg 261

                                                                       
Query: 62  tcctctgacctccactcctgcacagtgagatggtcctccccacaatcatacatccacaaa 121
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 262 tcctctgacctccactcatgcacagtgagatggtcctccccacaatcatacattcacaaa 321

                                                                       
Query: 122 ataaacaaaatgtaatgaaagcatgcatatatgtatattcatatttaaatctgaaatgat 181
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 322 ataaacaaaatgtaatgaaagcatgcatata--tatattcatatttaaatctgaaatgat 379

                                                                       
Query: 182 atttcattttcatttggaaaattctagaaataagtcaaatataatgtcagtatattagtt 241
           |  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 380 acctcattttcatttggaaaattctaaaaataagtcaaatataatgtcagtatattagtt 439

                                                                       
Query: 242 tatcggctcggttgaaagctcattcttgatgttccccccaaactcacattatcccttata 301
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 440 tatcagctcggttgaaagctcattcttgatgttccccccaaactcacattatccctgata 499

                           
Query: 302 aggcctctatttatct 317
           ||||||||||||||||
Sbjct: 500 aggcctctatttatct 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 718
Length adjustment: 9
Effective length of query: 311
Effective length of database: 709
Effective search space:   220499
Effective search space used:   220499
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)