BAC Information

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BAC

Clone NameMSMg01-324B24
Chromosome15 (Build37)
Map Location 70,450,934 - 70,630,030
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383050
Downstream geneLOC383051, 1700010C24Rik, LOC100040847, Col22a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-324B24.T7 (MSMg01no324_b24.b1)MSMg01-324B24.TJ (MSMg01no324_b24.g1)
ACCAG442360AG442361
length736742
length of high quality
(start - end)
636 (46 - 681)663 (80 - 742)
definitionCHROMAT_FILE: MSMg01no324_b24.b1 PHD_FILE: MSMg01no324_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:21 2005CHROMAT_FILE: MSMg01no324_b24.g1 PHD_FILE: MSMg01no324_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:08:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,450,934 - 70,451,564)(70,629,368 - 70,630,030)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACTGTTCTACCCCCTGCCCTTAAGTCTATTAATTTTAAAAATAA
CACTAAATTATTTTCCGGATCTAAATAAAAAGAGGGTGAAGCTATGGACT
TACTAAATGAGTTTCAGTTTATATTTCCTGACCTTACTTTGCAATAATTA
ATAAAGAGTCCATTGAAGAAAGTTATTGTTCTAATACAGCATTTTTAGCT
ACTTTCTTCATTCAGGAGTTCTTTGGCATCCTTTCCCCTTATGGTCAACT
TCTTCCTAGCTCTAAACAGTATTTTGTATGACATATTTTATCCAATACGC
AGTGACTGACTGCTGATAGCTATAAAACTGCCCGAGTTGTAAAAATGATT
TTTGAATATGCAAATGAAATCGTACAATGGTGAAAGAGGTTGGGATTAAT
GACAACAATGTCATAGTTGTAATAGAGTTTGAGATCTTTCTGAATAGAGA
ACAGGAAATGTAGACAGTCACAAGAACCAATCTTTTGTTATAATACTGCA
CATCCTTTGTTGGTTCTCCAGGCTCCAGTAAATCCATTCATGAGAGGTGT
AACTGGAGTAATGTTGCTATATTCTATTTTGTTCTAACCATTCCTTTTTG
AAATATTGAGGCCCCAACTATCTCTTTCTGACTAGTAGTATGTATCTGCT
AAGTTTCATAAGAGTAAAGAGTTAAGAGTAAAACTT
AAAAGGCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGGAGTATTCTTTTGAGAC
AATGGAGTGCACACATGTCACAAGATGTGCAGATGAATGAGAATCTTGGG
AAATGAAGAAACAATTGTTTTTCTGTTCAAAACTGTTCAAACCTAGGAAA
TAAAATAATGTGCCAGCACAAAGGACATTAGGAAAGAGGAATCTCATCTT
TGTCCCAGTATATCCAGGCCTCACCTTCTCTTGCTCCTTTTACTGATTTT
TTTGAGATCCACTCACCATATGAAGGATACCTACTTGTGCTCATTTGATT
GACTACAGTGTTAATTTGTCTACAAAAACAATCACAGGAATACTAAGAAT
GCTTGACTACTTGGCCCAGGAAACTATACACATAAACATGGTTGTCGTTG
TGATGTTATCCTAGTCATAATAAATGTACTAGTAAGATTCTGCACTAATT
GCCGACATAGAATTGTGTGGGCCAGACTTCTCATTGGGAATCTGTCCTGA
ATCCAATGAAGCAAAAGGCATTGTTTTAAATATAGATGGGCCCTTACTGA
TCTTGTACCTTCTAGGATTTCCAAGATAGCAAAGAGCATAGCATTATACT
GGTCTGTTTATATTCATGTATATGTCATGATCAACAGATAATGACAGAAG
GATATGGCAGACTCGGTAGTCTCCATGTCCCATTCCAATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no324_b24.b1 MSMg01no324_b24.b1 CHROMAT_FILE:
MSMg01no324_b24.b1 PHD_FILE: MSMg01no324_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:21 2005
         (636 letters)



>mm_chr15_70450730_70451765
          Length = 1036

 Score = 1127 bits (583), Expect = 0.0
 Identities = 619/631 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaactgttctaccccctgcccttaagtctattaattttaaaaataacactaaatt 64
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaactgttctaccatctgcccttaagtctattaattttaaaaataacactaaatt 264

                                                                       
Query: 65  attttccggatctaaataaaaagagggtgaagctatggacttactaaatgagtttcagtt 124
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atttgctggatctaaataaaaagagggtgaagctatggacttactaaatgagtttcagtt 324

                                                                       
Query: 125 tatatttcctgaccttactttgcaataattaataaagagtccattgaagaaagttattgt 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 tatatttcctgaccttactttgcaataattaataaagagtctattgaagaaagttattgt 384

                                                                       
Query: 185 tctaatacagcatttttagctactttcttcattcaggagttctttggcatcctttcccct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctaatacagcatttttagctactttcttcattcaggagttctttggcatcctttcccct 444

                                                                       
Query: 245 tatggtcaacttcttcctagctctaaacagtattttgtatgacatattttatccaatacg 304
           ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 445 tatggtcaacttcttcctagctctaaacagtattttgtatgacgtattttgtccaatacg 504

                                                                       
Query: 305 cagtgactgactgctgatagctataaaactgcccgagttgtaaaaatgatttttgaatat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cagtgactgactgctgatagctataaaactgcccgagttgtaaaaatgatttttgaatat 564

                                                                       
Query: 365 gcaaatgaaatcgtacaatggtgaaagaggttgggattaatgacaacaatgtcatagttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcaaatgaaatcgtacaatggtgaaagaggttgggattaatgacaacaatgtcatagttg 624

                                                                       
Query: 425 taatagagtttgagatctttctgaatagagaacaggaaatgtagacagtcacaagaacca 484
           |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 625 taatagagtttgagctctttctgaatagagaacaggaagtgtagacagtcacaagaacca 684

                                                                       
Query: 485 atcttttgttataatactgcacatcctttgttggttctccaggctccagtaaatccattc 544
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atcttttgttataatacttcacatcctttgttggttctccaggctccagtaaatccattc 744

                                                                       
Query: 545 atgagaggtgtaactggagtaatgttgctatattctattttgttctaaccattccttttt 604
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 745 atgagaggtgtaactggagtaatgttgttatattctattttgttctaaccattccttttt 804

                                          
Query: 605 gaaatattgaggccccaactatctctttctg 635
           |||||||||||||||| ||||||||||||||
Sbjct: 805 gaaatattgaggcccccactatctctttctg 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no324_b24.g1 MSMg01no324_b24.g1 CHROMAT_FILE:
MSMg01no324_b24.g1 PHD_FILE: MSMg01no324_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:08:21 2005
         (663 letters)



>mm_chr15_70629168_70630230
          Length = 1063

 Score = 1174 bits (607), Expect = 0.0
 Identities = 649/663 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaggagtattcttttgagacaatggagtgcacacatgtcacaagatgtgcagatgaatg 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 863 taaggagtattcttttgagacaatggagtgcacacatatcacaagatgtgcagatgaatg 804

                                                                       
Query: 61  agaatcttgggaaatgaagaaacaattgtttttctgttcaaaactgttcaaacctaggaa 120
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 agaatcatgagaaatgaagaaacaattgtttttctgttcaaaactgttcaaacctaggaa 744

                                                                       
Query: 121 ataaaataatgtgccagcacaaaggacattaggaaagaggaatctcatctttgtcccagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ataaaataatgtgccagcacaaaggacattaggaaagaggaatctcatctttgtcccagt 684

                                                                       
Query: 181 atatccaggcctcaccttctcttgctccttttactgatttttttgagatccactcaccat 240
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 683 atatccaggcctcgccttctcttggtccttttactgatttttttgagatccactcaccat 624

                                                                       
Query: 241 atgaaggatacctacttgtgctcatttgattgactacagtgttaatttgtctacaaaaac 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 623 atgaaggatacctacttgtgctcatttgactgactacagtgttaatttgtctacaaaaac 564

                                                                       
Query: 301 aatcacaggaatactaagaatgcttgactacttggcccaggaaactatacacataaacat 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aatcacaggaataataagaatgcttgactacttggcccaggaaactatacacataaacat 504

                                                                       
Query: 361 ggttgtcgttgtgatgttatcctagtcataataaatgtactagtaagattctgcactaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ggttgtcgttgtgatgttatcctagtcataataaatgtactagtaagattctgcactaat 444

                                                                       
Query: 421 tgccgacatagaattgtgtgggccagacttctcattgggaatctgtcctgaatccaatga 480
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 443 tgccgacatagaattgtgtgggccaggcttctcattgggaatctgtcctgaatccaatga 384

                                                                       
Query: 481 agcaaaaggcattgttttaaatatagatgggcccttactgatcttgtaccttctaggatt 540
           ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 383 agcaaaaggcattgtcttaaatatagatgggcccttactgatcttctaccttctaggatt 324

                                                                       
Query: 541 tccaagatagcaaagagcatagcattatactggtctgtttatattcatgtatatgtcatg 600
           ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 323 tccaagacagcaaagagcatagcattatactggtctgtttatatccatgtatatgtcatg 264

                                                                       
Query: 601 atcaacagataatgacagaaggatatggcagactcggtagtctccatgtcccattccaat 660
           |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 263 atcaacagataatggcagaaggatatggcagacttggtagtctccatgtcccattccaat 204

              
Query: 661 ttc 663
           |||
Sbjct: 203 ttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)