BAC Information

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BAC

Clone NameMSMg01-325L21
Chromosome15 (Build37)
Map Location 40,126,161 - 40,126,869
singlet/doubletsinglet
Overlap geneLOC670013
Upstream geneRims2, Tm7sf4, Dpys, Lrp12, LOC100039130
Downstream geneLOC664872, Zfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325L21.T7 (MSMg01no325_l21.b1)MSMg01-325L21.TJ (MSMg01no325_l21.g1)
ACCAG443551AG443552
length758983
length of high quality
(start - end)		714 (45 - 758)---
definitionCHROMAT_FILE: MSMg01no325_l21.b1 PHD_FILE: MSMg01no325_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:18 2005CHROMAT_FILE: MSMg01no325_l21.g1 PHD_FILE: MSMg01no325_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAGAGAGAAAACTTTACCAATGATGACATTTGAAGTATGTGGGAT
AGAAATTGTTAAGGAAAGATGTTGCTTATTCTAGGTCTATGGGATTCCAT
GCTCTATCGCCAGATTAGGAGATACTGATTTGAGAAAGATGTAAATTACA
ACCTTCCGATTCCCTTAAGATATTTCCCTAAGATATATTCCCTAAGGTTC
CATTTCTTCTGAATGCTGGGTGTCACCTTCTTTCTTTTAATTTCCTCTTA
TATCAGGTGGGCCCATAAAAACCATCTTCCTACTATGTGCTTAAACACAG
CCAAAATGCAACTTCCTATTTTCTTGTTTCAGCATCTACAAACACTCCTA
ATTTTCTGTTCTCTATACCTAACCTAGAGACACACCACTCTTCCAGTGGG
CCTCACTGCCTCGTGCATGATTCTTAGAACCTCAAGTTTAAGATTTCAGA
AAGAAACTAGCCTCTGAATAATATATAAAGTCTAGCATATTGGAAAGCTT
GCCATAGAATTAGCATAGAATAAGCAGAATTCAAGTTTTAACCTTACAAT
AGCTGTATCACTGGCTGCTTGAGAGCTGGCCTTCTTAAACAAACAGTATC
AAGTGCAAACACATACCCTTTTTCCTCTTTGCTTGGATATTTTCTTTATT
CACATTTTANACGTTTTCCCCTTTCCAGGTTTCCCCTTCGGAAACACCCT
ATCCCATN

CAAGTGGGGTAAGGCCTGGGNNCGGCCGCCTGGGCCTTCCGACATATATA
NGNNGTGACACTATNNAGAAGGATCTCCCCGGAATATCCTTCCCTCCAGC
CCACATCCCTCAGAAAACGATGTGGGTTCTTGGGGATTCATCCCGCCTCC
CTGATNNGAAGGGNNGAAGGATNNAGCTCAGTGGGGCAGAACTTGGCANN
AGCTGACNCAAGATGGGCCCTGGGATCAAAACGCAGAAAGGAGACAAGTC
TCTNTCCCTGGTATATCCTGTGTNNAATTAATAATCCACGCAGGGTTAAA
AAATGGTCTTTACAAAAAGCATAATGCTGCTATTTANAAAATACTACACA
ACCGTATCTAATAGGNNNNNGAGAGGNNNNAGAGAGAGGAGGAAGAAAAA
ATTTCTCCACCTGTTTTTAAACCGGCGGCGGTTGGTTTTTTACAAACAAA
TGGAGGGATGGGGCGCCCCGGCGGGGGAATAAATATAAGAGATAAAGAAG
CGCAACACGCCCCACCCCNNNNNGTTTCCGTCGCCCTGAACAAAACAAGN
NNNNNNNNNNNNTCGCCCCCGCCCCGGGGAAGAATAAAAAAAGACGCGTG
GGCGGCCAAAACCCCTTCTTTCGAGTTTTGTGAAAATTACAAACCACACT
TTAAAATTTTTCACGGGCCGCCCCCCGAGGGGAAGAGAGGAAAANNNNNN
NNNNNNNGGAAAAAAGTAAAATAATANCNNNCCCCCCGTCTTCTTCTCGG
NNNNNTTTTANCTCGAGGAGAAAACACTACCACAANNNNNNNNNCAAAAA
CAAACCCCCCGAGGGGAATATTTTTATTCTCCCCCCTCCCCACCCGCGGG
AATGTTGCTGACCGCGCCTCCAAACTCCCTCTTCCCCCNNNNNNAAAAAN
NNNNCCNNCCCNCCCNCACCATNNAANTCCCCCCCACCCTCCTTCATNAG
GAGAACACTCCTTGCCTTCTTTATTCCTATTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_l21.b1 MSMg01no325_l21.b1 CHROMAT_FILE:
MSMg01no325_l21.b1 PHD_FILE: MSMg01no325_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:18 2005
         (714 letters)



>mm_chr15_40125957_40127070
          Length = 1114

 Score = 1334 bits (690), Expect = 0.0
 Identities = 704/709 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctagagagaaaactttaccaatgatgacatttgaagtatgtgggatagaaattg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctagagagaaaactttaccaatgatgacatttgaagtatgtgggatagaaattg 264

                                                                       
Query: 65  ttaaggaaagatgttgcttattctaggtctatgggattccatgctctatcgccagattag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaaggaaagatgttgcttattctaggtctatgggattccatgctctatcgccagattag 324

                                                                       
Query: 125 gagatactgatttgagaaagatgtaaattacaaccttccgattcccttaagatatttccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagatactgatttgagaaagatgtaaattacaaccttccgattcccttaagatatttccc 384

                                                                       
Query: 185 taagatatattccctaaggttccatttcttctgaatgctgggtgtcaccttctttctttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taagatatattccctaaggttccatttcttctgaatgctgggtgtcaccttctttctttt 444

                                                                       
Query: 245 aatttcctcttatatcaggtgggcccataaaaaccatcttcctactatgtgcttaaacac 304
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatttcctcttatatcaggtgggtccataaaaaccatcttcctactatgtgcttaaacac 504

                                                                       
Query: 305 agccaaaatgcaacttcctattttcttgtttcagcatctacaaacactcctaattttctg 364
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 505 agccaaaatgcaacttcctattttcttgcttcagcatctacaaacactcctaattttctg 564

                                                                       
Query: 365 ttctctatacctaacctagagacacaccactcttccagtgggcctcactgcctcgtgcat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttctctatacctaacctagagacacaccactcttccagtgggcctcactgcctcgtgcat 624

                                                                       
Query: 425 gattcttagaacctcaagtttaagatttcagaaagaaactagcctctgaataatatataa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gattcttagaacctcaagtttaagatttcagaaagaaactagcctctgaataatatataa 684

                                                                       
Query: 485 agtctagcatattggaaagcttgccatagaattagcatagaataagcagaattcaagttt 544
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 685 agtctagcatattggaaagcttgccatagaattagcatagaataatcagaattcaagttt 744

                                                                       
Query: 545 taaccttacaatagctgtatcactggctgcttgagagctggccttcttaaacaaacagta 604
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taaccttacaatagccgtatcactggctgcttgagagctggccttcttaaacaaacagta 804

                                                                       
Query: 605 tcaagtgcaaacacataccctttttcctctttgcttggatattttctttattcacatttt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tcaagtgcaaacacataccctttttcctctttgcttggatattttctttattcacatttt 864

                                                            
Query: 665 anacgttttcccctttccaggtttccccttcggaaacaccctatcccat 713
           | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 aaacgttttcccctttccaggtttccccttcggaaacaccctatcccat 913


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 714
Length of database: 1114
Length adjustment: 10
Effective length of query: 704
Effective length of database: 1104
Effective search space:   777216
Effective search space used:   777216
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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