Query= MSMg01no326_l06.b1 MSMg01no326_l06.b1 CHROMAT_FILE:
MSMg01no326_l06.b1 PHD_FILE: MSMg01no326_l06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:27 2005
(687 letters)
>mm_chr15_40635438_40636524
Length = 1087
Score = 1247 bits (645), Expect = 0.0
Identities = 676/689 (98%), Gaps = 5/689 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttacatctctctagccttacctcttggaactcaagctgaagacatgaactttt 63
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttacatctctctagccttaccgcttggaactcaagctgaagacatgaactttt 263
Query: 64 atcatttattttaataaatatatatttatctttttaaacttttaaaccacatcccatcct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atcatttattttaataaatatatatttatctttttaaacttttaaaccacatcccatcct 323
Query: 124 agtaactaatttatttgtttaaataaattttaactgaaatatactcacatctttccaacc 183
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agtaactgatttatttgtttaaataaattttaactgaaatatactcacatctttccaacc 383
Query: 184 atttatgagtgcattttaaggatagtttatctatggacattgtatgtattttgagaacac 243
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 384 atttatgagtacattttaaggatagttcatctatggacattgtatgtattttgagaacac 443
Query: 244 gaattttcaaaatattttttataattatatctgcatctacctaagaatacaaatagattg 303
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 444 gaattttcaaaatattttttataattatatctgcatctacctaagaacacaaatagattg 503
Query: 304 ctttggtttcagtttctgtttaccaaaagaagttagagttttaagagacagaatagcatc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctttggtttcagtttctgtttaccaaaagaagttagagttttaagagacagaatagcatc 563
Query: 364 acttctaccactaaactcagatgaacgcaggatgatagactaaggactatgtgtggaaga 423
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 564 acttctaccactaaactcagatgaacgcaggatgatagaccaaggactaactgtggaaga 623
Query: 424 aagcaggcattctttatgacctaaagctcaggtttagacagaaaatgcctccctagaagc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagcaggcattctttatgacctaaagctcaggtttagacagaaaatgcctccctagaagc 683
Query: 484 ttcattcattggcaagtttaatcacagaaggtcctggtttcacagaatgatctaattgta 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttcattcattggcaagtttaatcacagaaggtcctggtttcacagaatgatctaattgta 743
Query: 544 attgttgacagcatatggccacacagacctagggtaatgcaacagagtactgcagcctgc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 attgttgacagcatatggccacacagacctagggtaatgcaacagagtactgcagcctgc 803
Query: 604 acgtctagtagatgacccagcataccattcagctcacaactatgcataact-----tcca 658
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 804 acgtctagtagatgacccagcataccattcagctcacaactatgcataactccagttcca 863
Query: 659 gggaatccaatgctctctggcctttgtga 687
|||||||||||||||||||||||||||||
Sbjct: 864 gggaatccaatgctctctggcctttgtga 892
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no326_l06.g1 MSMg01no326_l06.g1 CHROMAT_FILE:
MSMg01no326_l06.g1 PHD_FILE: MSMg01no326_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:27 2005
(649 letters)
>mm_chr15_40781689_40782740
Length = 1052
Score = 951 bits (492), Expect = 0.0
Identities = 528/546 (96%), Gaps = 11/546 (2%)
Strand = Plus / Minus
Query: 1 catacacagaggatcccacgtacttttaaggatggggacatgacctaggctacgagcaaa 60
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 546 catacacagaggatcccacgtgcttttaaggatggggacatgacctaggctccgagcaaa 487
Query: 61 agattgtggtagctcagttttccgtttccaggaaggaagagccacggacagttgttgtgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agattgtggtagctcagttttccgtttccaggaaggaagagccacggacagttgttgtgg 427
Query: 121 ctcagtcctaaaacac---tattgtgaaatatcttgccaccaggaaattgactgcatctc 177
||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctcagccctaaaacacaattgttgtgaaatatcttgccaccaggaaattgactgcatctc 367
Query: 178 agaacctccaaaatagaacataactgcaggacatcttaagatccatatggatttctggtc 237
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 366 agaacctccaaaatagaacatatctgcaggacatcttaagatccatatggatttctggtc 307
Query: 238 tacataattgtaaaatgataatttggggattgacacctctgttggtgatttaacaacaca 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tacataattgtaaaatgataatttggggattgacacctctgttggtgatttaacaacaca 247
Query: 298 aacaggaaaacctagttagcaaaaaatatattcagatttacttatccgcgtttccttcct 357
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 246 aacaggaaaacctagttagcaaaaaatatattcagatttacttatctgtgtttccttcct 187
Query: 358 tccttccttccttccttccttccttccttccttccttccttccttccttc--------ct 409
|||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 186 tccttccttccttccttccttccttccttccttccttccttccttccttctttcctttct 127
Query: 410 tccttccttccttcctcccttcctcccttcctctctttcttttgtttttaaaagatcaaa 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 tccttccttccttcctcccttcctcccttcctctctttcttttgtttttaaaagatcaaa 67
Query: 470 atttcattctcaaatgctttcaaagttataaaataacttctttttggaactataactgat 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 atttcattctcaaatgctttcaaagttataaaataacttctttttggaactataactgat 7
Query: 530 gttcct 535
||||||
Sbjct: 6 gttcct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1052
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1042
Effective search space: 665838
Effective search space used: 665838
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
