BAC Information

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BAC

Clone NameMSMg01-326L09
Chromosome15 (Build37)
Map Location 81,466,813 - 81,467,179
singlet/doubletsinglet
Overlap geneEp300
Upstream geneGrap2, AW544981, Tnrc6b, Adsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1, Slc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080
Downstream geneL3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326L09.T7 (MSMg01no326_l09.b1)MSMg01-326L09.TJ (MSMg01no326_l09.g1)
ACCAG444261AG444262
length740781
length of high quality
(start - end)
371 (46 - 416)249 (76 - 324)
definitionCHROMAT_FILE: MSMg01no326_l09.b1 PHD_FILE: MSMg01no326_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:27 2005CHROMAT_FILE: MSMg01no326_l09.g1 PHD_FILE: MSMg01no326_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAAGATTCTGCCGCATCATTGACAAACATGTCCAGTATCTTCTGT
AAATTCTATCAAAAGACAACTGTCATGCCCAAAGAGCTAAAAAATTAGTT
TAGTGGAGTTTTTTCTGGCTTTTATGTTATAGGGAGGGCAAGTTTCAGAA
GCGATAAAGCACAGCTATGTTACCAACAACCTAACATTTTAATCCAGAAG
GGCAGCTGCTCTTAATTCAGAGTTAGAAGAGGGAACATGTCCTCTTGAGT
GCACGAGGCTCAGAAAGCTGACAGGTAGGCTAAGGGATTCTGAGGATGCA
CAGGAAATGCAGTGAGGAGAGCACAGCACTGGGCAGAAGCAGTGTGCTGT
TTGACAGGGAACATTACCCCCCCACTAACTGTAAAGCGATAGATGGCCTT
AGGCCCTGTAATATTTATGATAGTCAGATGTTAGTGCAAGAACATTAGGT
TATCTTGAAGGGAAAAAAAAAAAAAAAAGGGCAGAGAGTATACCGATAAT
TCATGGGAAATTACTTACAGGTCAGGACTCAACGTGTCATTTTTTCTCTT
GGAAAACTGTTCTTTATTTATTGTACTACGGACAGAAAATAGACATACTG
CGACAACCTACCATCTTAACGACTATCTTGATTCACCAACGGCTCTTTGA
ACATAAATCACCTTTTTGTGACTATTTCTTTGTGCCATAG
CGATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGGGAACTTTTCAGAGGGTATGTAA
ATGCTAGGGTCCCAGGAGGTGACGCTGTTCAGGGGGGTTGGTTGAGGTTT
GTTAGTCGATGTGCTCAAAGAAGAAACACGAAAGAAACCAGATTCAAGGA
TCTCTGTCTCTTTCTCCACTCTATCCTTCTTTCCTCTCTTATCTACTGAT
AGGAGGTAAAAGGATGGAGGGGATAAATAGTGGAAAAAAGAAGACCCACT
AAGTATCGAAGTCCAGCTACAGAGATCTGTCTGCCTCTGCCTTCCTAGTG
CTGGGATTAAAGGCGTCCATCACCATCACCACCATCTGGCTGTTAATTTT
TTTTCTTTTTCTTTTCTCTGCCCCCCCCTTCTCTTTCCCCATTATTTATT
CACTTCACATCGTGGTCTCACCCCCATCTCCATCCTCTCCTTCCAGTCTC
ACCCTTACATATCTCCCCCCATTACCCTCTCCTCCTCTTTCTCCTTTTAT
TACGGGAAATACCCCTTCTATTGGGCCCTTTTTGATTTGGTTATCCTTAT
AAACCACCCCTAATACAATGGTATTTCCTTTCTCCCCTGTAGTTCCCAGT
CAACTAGTTATCCCAGTTTATTTATAACAGGGTGTATCTCCTTTTCACTA
TGTTCACCCCCAGTTTTGTAATATTAGGTTCTCTTAACTCAATATTTTGA
NCAGTGGATATTTCCTAATTTTTGTACTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_l09.b1 MSMg01no326_l09.b1 CHROMAT_FILE:
MSMg01no326_l09.b1 PHD_FILE: MSMg01no326_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:27 2005
         (371 letters)



>mm_chr15_81466609_81467379
          Length = 771

 Score =  679 bits (351), Expect = 0.0
 Identities = 363/367 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaagattctgccgcatcattgacaaacatgtccagtatcttctgtaaattctat 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gaattctaagattctgaagcatcattgacaaacatgtccagtatcttctgtaaattctat 512

                                                                       
Query: 65  caaaagacaactgtcatgcccaaagagctaaaaaattagtttagtggagttttttctggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 caaaagacaactgtcatgcccaaagagctaaaaaattagtttagtggagttttttctggc 452

                                                                       
Query: 125 ttttatgttatagggagggcaagtttcagaagcgataaagcacagctatgttaccaacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ttttatgttatagggagggcaagtttcagaagcgataaagcacagctatgttaccaacaa 392

                                                                       
Query: 185 cctaacattttaatccagaagggcagctgctcttaattcagagttagaagagggaacatg 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 391 cctaacattttaatccagaagggcagctgctctcaattcagagttagaagagggaacatg 332

                                                                       
Query: 245 tcctcttgagtgcacgaggctcagaaagctgacaggtaggctaagggattctgaggatgc 304
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tcctcttgaatgcacgaggctcagaaagctgacaggtaggctaagggattctgaggatgc 272

                                                                       
Query: 305 acaggaaatgcagtgaggagagcacagcactgggcagaagcagtgtgctgtttgacaggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 acaggaaatgcagtgaggagagcacagcactgggcagaagcagtgtgctgtttgacaggg 212

                  
Query: 365 aacatta 371
           |||||||
Sbjct: 211 aacatta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)