BAC Information

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BAC

Clone NameMSMg01-326L22
Chromosome15 (Build37)
Map Location 34,840,580 - 34,840,950
singlet/doubletsinglet
Overlap geneStk3
Upstream geneLOC675463, Mtdh, Laptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1, Npal2, Kcns2
Downstream geneOsr2, Vps13b, EG666183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-326L22.T7 (MSMg01no326_l22.b1)MSMg01-326L22.TJ (MSMg01no326_l22.g1)
ACCAG444284AG444285
length746748
length of high quality
(start - end)		376 (48 - 423)342 (75 - 416)
definitionCHROMAT_FILE: MSMg01no326_l22.b1 PHD_FILE: MSMg01no326_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:30 2005CHROMAT_FILE: MSMg01no326_l22.g1 PHD_FILE: MSMg01no326_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:11:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAACTAGGAAATCTTACAAACAGAAGCAAAGCTAATATAGCAGA
TGATATAGGTTTGTAGATCAAAGACATCAATAATCAAGAGGACAGTGCTA
GTATTCGAACGGGAAAAAATAGCACACAAAGATTTCTTTTCAGCCGGGTG
TGGTGGCACACGCCTTTAATCCCAGAACTCCGGAGGCAGAGGCAGGCGGA
TTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCC
AGAGTTATACAGAGAAAGAAACTCTGTCTGGAAAAAACAAAACAAAAAAC
CAAAACCAAAACCAAAAAAAAACAAAAAACAAAAAAAAAAACCCAAAAAA
ACAAAAACCAAGATTTCTTTCCCACACTGAGAATAAAGTAATGATGAGCT
ACAAATGAAACCCTGTTACAAATTATCTTTAGCTCTTAGTCATCTGTCAG
ATTAAGCCATCAACCCACTGCTTCTTAGGTGCTTTAACAAAACAAAGGTA
GCATTCAAATGCATACCTTCAATTAAGAAAAAACAAAAACTCAAGGTGAA
ACTGAGTTACTTGCCCTTTAAAGCAGCAAGCACAGACTGATGATGTCATT
ACAGTATTCATTTGTTACTACTAAATGCTTATAAAGTTTCTCCAAAAAGC
CAGTGTAATATATTATGATAACCTAGTGAAAATGAGGGTTTCTAAN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTATGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGAT
CAGTCTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTACCCCCCACTAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAGGAACCCAGATACCCCTCAACAGAGGAATGGATACAGAAGA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTGGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACAATTTC
CTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTGTGAACACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no326_l22.b1 MSMg01no326_l22.b1 CHROMAT_FILE:
MSMg01no326_l22.b1 PHD_FILE: MSMg01no326_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:11:30 2005
         (376 letters)



>mm_chr15_34840376_34841151
          Length = 776

 Score =  690 bits (357), Expect = 0.0
 Identities = 367/371 (98%), Gaps = 2/371 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaactaggaaatcttacaaacagaagcaaagctaatatagcagatgatataggtt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaactaggaaatcttacaaacagaagcaaagctaatatagcagatgatataggtt 264

                                                                       
Query: 65  tgtagatcaaagacatcaataatcaagaggacagtgctagtattcgaacgggaaaaaata 124
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 tgtagatcaaagacatcaataatcaagaggacagtgctaatattcgaacgggaaaaaata 324

                                                                       
Query: 125 gcacacaaagatttcttttcagccgggtgtggtggcacacgcctttaatcccagaactcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcacacaaagatttcttttcagccgggtgtggtggcacacgcctttaatcccagaactcc 384

                                                                       
Query: 185 ggaggcagaggcaggcggatttctgagttcgaggccagcctggtctacaaagtgagttcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggaggcagaggcaggcggatttctgagttcgaggccagcctggtctacaaagtgagttcc 444

                                                                       
Query: 245 aggacagccagagttatacagagaaagaaactctgtctggaaaaaacaaaacaaaaaacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggacagccagagttatacagagaaagaaactctgtctggaaaaaacaaaacaaaaaacc 504

                                                                       
Query: 305 aaaaccaaaaccaaaaaaaaacaaaaaa--caaaaaaaaaaacccaaaaaaacaaaaacc 362
           ||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||
Sbjct: 505 aaaaccaaaaccaaaaaaaaaaaaaaaaaacaaaaaaaaaaacccaaaaaaacaaaaacc 564

                      
Query: 363 aagatttcttt 373
           |||||||||||
Sbjct: 565 aagatttcttt 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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