BAC Information

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BAC

Clone NameMSMg01-327P11
Chromosome15 (Build37)
Map Location 52,227,435 - 52,393,159
singlet/doubletdoublet
Overlap geneLOC100039748
Upstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8
Downstream geneThrap6, LOC100039745, Ext1, Samd12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-327P11.T7 (MSMg01no327_p11.b1)MSMg01-327P11.TJ (MSMg01no327_p11.g1)
ACCAG445185AG445186
length733733
length of high quality
(start - end)
690 (44 - 733)636 (72 - 707)
definitionCHROMAT_FILE: MSMg01no327_p11.b1 PHD_FILE: MSMg01no327_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:58 2005CHROMAT_FILE: MSMg01no327_p11.g1 PHD_FILE: MSMg01no327_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:12:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,392,487 - 52,393,159)(52,227,435 - 52,228,068)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAAGTTCTACCGCTGTGAATCTACACTTGTGCTTATGACATATTTCC
ATGTTCTTGGACTATTTTTTAACCAGTGAAAATTTACATACAGAAGTGCT
CCCTTTGACAGTTTGGTGCTCTGCATCATTCTCACAATGATAGGACAGGT
AGAGTACCTTTATTCAATTCCAGTATATTTATTCAACAAAAACAGACTAC
CTCTCATTTATAGAAACACTATGCTTCCTAACGACCTTTAAGTTAAAGAG
GAAAAAAATATTAAAGAAGGAGGGACTACAGGAAATTGTATCAAAAGTGA
TTGTAGATGGAGAGAAGGAACCTAAGGCAAGGAAATGTTGAAGAGATATG
TTAATCTGGAAACACTTTACATCAATATTGGACTATTTTGAAATAACAGA
TGAAGAAGAAAATACTAGATACTTCATGCTAGGTCCTTCACTCAGTTCTA
TTCCTGGCTTTTTTCAGTTCCTTCTAATGACAGCATTGTATGGGTTGTCT
TCATCATTCAACCACTTAGGTGAGAAAAGGATGCATTTATATATGAGTGA
CACAGGTTAATTAGCAACTGATGGTAGCAGTGAGGTTCTTACTTAGGGTC
TCCCCCCCCCCCCATCAGGGGCTGACCATACAGAGAACCCGCTTTCTGGT
TGAGAATCTTTGAATCTTTTCTACTACATTTCT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTATGAGGGGAAAAACCAATTGGAGAGAAA
AAGGAATTTGTCTATTGTCAGTGTGTCTTTATGTGGAGAGACAATCTTTG
ATGTAGCTGATAGCTTGGTTATATAATAGTCCAAGAATACAGAAGTAGCA
TGTGATGTATTATGTAGCACTTGAGACCAAAGTTTGCTCCTCTCAGACTA
GCATGAAAAGTTCACTCTGGAAATTTCTATTGAAAAAGAAAATTTCTTTG
TAATAAATCAGGACCTGTGAAAGTTGTCTTTAAGTAGGTTCCTCATATAC
AGTTCAGGAAAGAAAAAAAAGTTAACTCATTAAGATTAATGGCTCCTGAA
GCATCCCAGCATGTTACAGACACTAAACTTTTAACAAAGAAGCTTGCTTC
TAAGGAGGTAGGTATTGAACCTGCCAGAACAGCAAGTAAGTCATGCTTTA
CTGAAGGCAGTAAGCAATTCTAAAGATGGCTATCTCTATCAACTATCCCA
CCAGAAAATAAAAGAACAATAACGGTCATCTGGAAAAAAATGAATTTAAA
AAGGTCAGCTCACCAAAATGAAGCAGAAAGAAAAGCTAACTAAATTGAGA
ACTGTTGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGACCGTTCTCCTTTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no327_p11.b1 MSMg01no327_p11.b1 CHROMAT_FILE:
MSMg01no327_p11.b1 PHD_FILE: MSMg01no327_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:58 2005
         (690 letters)



>mm_chr15_52392297_52393381
          Length = 1085

 Score = 1170 bits (605), Expect = 0.0
 Identities = 661/687 (96%), Gaps = 15/687 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagttctaccgctgtgaatctacacttgtgcttatgacatatttccatgttct 64
           |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 863 gaattccaagttctacagctgtgaatctacacttgtacttatgacatatttccatgttct 804

                                                                       
Query: 65  tggactattttttaaccagtg-aaaatttacatacagaagtgctccctttgacagtttgg 123
           || | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tgaattattttttaaccagtgaaaaatttacatacagaagtgctccctttgacagtttgg 744

                                                                       
Query: 124 tgctctgcatcattctcacaatgataggacaggtagagtacctttattcaattccagtat 183
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgctctgcatcattctcacgatgataggacaggtagagtacctttattcaattccagtat 684

                                                                       
Query: 184 atttattcaacaaaaacagactacctctcatttatagaaacactatgcttcctaacgacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atttattcaacaaaaacagactacctctcatttatagaaacactatgcttcctaacgacc 624

                                                                       
Query: 244 tttaagttaaagaggaaaaaaatattaaagaaggagggactacaggaaattgtatcaaaa 303
           ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 623 tttaagttaaagagg-aaaaaatattaaagaaggagggactacaggaaattttatcaaaa 565

                                                                       
Query: 304 gtgattgtagatggagagaaggaacctaaggcaaggaaatgttgaagagatatgttaatc 363
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 564 gtgattgtagatggagagaaggaacctaaggcaaggaaatgttgaagagacatgttaatc 505

                                                                       
Query: 364 tggaaacactttacatcaatattggactattttgaaataacagatgaagaagaaaatact 423
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggaaacactttagatcaatattggactattttgaaataacagatgaagaagaaaatact 445

                                                                       
Query: 424 agatacttcatgctaggtccttcactcagttctattcctggcttttttcagttccttcta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agatacttcatgctaggtccttcactcagttctattcctggcttttttcagttccttcta 385

                                                                       
Query: 484 atgacagcattgtatgggttgtcttcatcattcaaccacttaggtgagaaaaggatgcat 543
           |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgacaccattgtaggggttgtcttcatcattcaaccacttaggtgagaaaaggatgcat 325

                                                                       
Query: 544 ttatatatgagtgacacaggttaattagcaactgatggtagcagtgaggttcttacttag 603
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgtatatgagtgacacaggttaattagcaactgatggtagcagtgaggttcttacttag 265

                                                                       
Query: 604 ggtctccccccccccccatcaggggctgaccatacagagaacccgctttctggttgagaa 663
           ||||     |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtc-----ccccccccatcaggggctgaccatacagagaacccgctttctggttgagaa 210

                                      
Query: 664 tctttgaatcttttctactacatttct 690
           |||||        ||||||||||||||
Sbjct: 209 tcttt--------tctactacatttct 191


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1085
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1075
Effective search space:   731000
Effective search space used:   731000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no327_p11.g1 MSMg01no327_p11.g1 CHROMAT_FILE:
MSMg01no327_p11.g1 PHD_FILE: MSMg01no327_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:58 2005
         (636 letters)



>mm_chr15_52227235_52228270
          Length = 1036

 Score = 1158 bits (599), Expect = 0.0
 Identities = 627/637 (98%), Gaps = 4/637 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgaggggaaaaaccaattggagagaaaaaggaatttgtctattgtcagtgtgtcttta 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tatgaggggaaaaaccaattggagagaaaaagggatttgtctattgtcagtgtgtcttta 260

                                                                       
Query: 61  tgtggagagacaatctttgatgtagctgatagcttggttatataatagtccaagaataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtggagagacaatctttgatgtagctgatagcttggttatataatagtccaagaataca 320

                                                                       
Query: 121 gaagtagcatgtgatgtattatgtagcacttgagaccaaagtttgctcctctcagactag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagtagcatgtgatgtattatgtagcacttgagaccaaagtttgctcctctcagactag 380

                                                                       
Query: 181 catgaaaagttcactctggaaatttctattgaaaaagaaaatttctttgtaataaatcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgaaaagttcactctggaaatttctattgaaaaagaaaatttctttgtaataaatcag 440

                                                                       
Query: 241 gacctgtgaaagttgtctttaagtaggttcctcatatacagttcaggaaagaaaaaaaag 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 gacctgtgaaagttgtctttaagtaggttcctcatatacagttcaggaaagaaaaaaa-g 499

                                                                       
Query: 301 ttaactcattaagattaatggctcctgaagcatcccagcatgttacagacactaaacttt 360
           |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 500 ttaactcattaagattaatggctcctgaagcatcccagcatgctacagagactaaacttt 559

                                                                       
Query: 361 taacaaagaagcttgcttctaaggaggtaggtattgaacctgccagaacagcaagtaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taacaaagaagcttgcttctaaggaggtaggtattgaacctgccagaacagcaagtaagt 619

                                                                       
Query: 421 catgctttactgaaggcagtaagcaattctaaagatggctatctctatcaactatcccac 480
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 catgctttaccgaaggcagtaagcaattctaaagatggctatctctatcaactatcccac 679

                                                                       
Query: 481 cagaaaataaaagaacaataacggtcatctggaaaaaaa-tgaatttaaaaaggtcagct 539
           ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 680 cagaaaataaaagaacaatgacggtcatctggaaaaaaaatgaatttaaaaaggtcagct 739

                                                                       
Query: 540 caccaaaatgaagcagaaagaaaagctaactaaattgagaactgttgagagggagagaga 599
           ||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||
Sbjct: 740 caccaaaatgaagcagaaagaaaagctaactaaattgagaactg--gagagagagagaga 797

                                                
Query: 600 gagagagagagagagagagagagagagagagagagag 636
           |||||||||||||||||||||||||||||||||||||
Sbjct: 798 gagagagagagagagagagagagagagagagagagag 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)