Query= MSMg01no327_p11.b1 MSMg01no327_p11.b1 CHROMAT_FILE:
MSMg01no327_p11.b1 PHD_FILE: MSMg01no327_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:58 2005
(690 letters)
>mm_chr15_52392297_52393381
Length = 1085
Score = 1170 bits (605), Expect = 0.0
Identities = 661/687 (96%), Gaps = 15/687 (2%)
Strand = Plus / Minus
Query: 5 gaattccaagttctaccgctgtgaatctacacttgtgcttatgacatatttccatgttct 64
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 863 gaattccaagttctacagctgtgaatctacacttgtacttatgacatatttccatgttct 804
Query: 65 tggactattttttaaccagtg-aaaatttacatacagaagtgctccctttgacagtttgg 123
|| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tgaattattttttaaccagtgaaaaatttacatacagaagtgctccctttgacagtttgg 744
Query: 124 tgctctgcatcattctcacaatgataggacaggtagagtacctttattcaattccagtat 183
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tgctctgcatcattctcacgatgataggacaggtagagtacctttattcaattccagtat 684
Query: 184 atttattcaacaaaaacagactacctctcatttatagaaacactatgcttcctaacgacc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atttattcaacaaaaacagactacctctcatttatagaaacactatgcttcctaacgacc 624
Query: 244 tttaagttaaagaggaaaaaaatattaaagaaggagggactacaggaaattgtatcaaaa 303
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 623 tttaagttaaagagg-aaaaaatattaaagaaggagggactacaggaaattttatcaaaa 565
Query: 304 gtgattgtagatggagagaaggaacctaaggcaaggaaatgttgaagagatatgttaatc 363
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 564 gtgattgtagatggagagaaggaacctaaggcaaggaaatgttgaagagacatgttaatc 505
Query: 364 tggaaacactttacatcaatattggactattttgaaataacagatgaagaagaaaatact 423
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggaaacactttagatcaatattggactattttgaaataacagatgaagaagaaaatact 445
Query: 424 agatacttcatgctaggtccttcactcagttctattcctggcttttttcagttccttcta 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agatacttcatgctaggtccttcactcagttctattcctggcttttttcagttccttcta 385
Query: 484 atgacagcattgtatgggttgtcttcatcattcaaccacttaggtgagaaaaggatgcat 543
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgacaccattgtaggggttgtcttcatcattcaaccacttaggtgagaaaaggatgcat 325
Query: 544 ttatatatgagtgacacaggttaattagcaactgatggtagcagtgaggttcttacttag 603
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgtatatgagtgacacaggttaattagcaactgatggtagcagtgaggttcttacttag 265
Query: 604 ggtctccccccccccccatcaggggctgaccatacagagaacccgctttctggttgagaa 663
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtc-----ccccccccatcaggggctgaccatacagagaacccgctttctggttgagaa 210
Query: 664 tctttgaatcttttctactacatttct 690
||||| ||||||||||||||
Sbjct: 209 tcttt--------tctactacatttct 191
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1085
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1075
Effective search space: 731000
Effective search space used: 731000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no327_p11.g1 MSMg01no327_p11.g1 CHROMAT_FILE:
MSMg01no327_p11.g1 PHD_FILE: MSMg01no327_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:12:58 2005
(636 letters)
>mm_chr15_52227235_52228270
Length = 1036
Score = 1158 bits (599), Expect = 0.0
Identities = 627/637 (98%), Gaps = 4/637 (0%)
Strand = Plus / Plus
Query: 1 tatgaggggaaaaaccaattggagagaaaaaggaatttgtctattgtcagtgtgtcttta 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 tatgaggggaaaaaccaattggagagaaaaagggatttgtctattgtcagtgtgtcttta 260
Query: 61 tgtggagagacaatctttgatgtagctgatagcttggttatataatagtccaagaataca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtggagagacaatctttgatgtagctgatagcttggttatataatagtccaagaataca 320
Query: 121 gaagtagcatgtgatgtattatgtagcacttgagaccaaagtttgctcctctcagactag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagtagcatgtgatgtattatgtagcacttgagaccaaagtttgctcctctcagactag 380
Query: 181 catgaaaagttcactctggaaatttctattgaaaaagaaaatttctttgtaataaatcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catgaaaagttcactctggaaatttctattgaaaaagaaaatttctttgtaataaatcag 440
Query: 241 gacctgtgaaagttgtctttaagtaggttcctcatatacagttcaggaaagaaaaaaaag 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 gacctgtgaaagttgtctttaagtaggttcctcatatacagttcaggaaagaaaaaaa-g 499
Query: 301 ttaactcattaagattaatggctcctgaagcatcccagcatgttacagacactaaacttt 360
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 500 ttaactcattaagattaatggctcctgaagcatcccagcatgctacagagactaaacttt 559
Query: 361 taacaaagaagcttgcttctaaggaggtaggtattgaacctgccagaacagcaagtaagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 taacaaagaagcttgcttctaaggaggtaggtattgaacctgccagaacagcaagtaagt 619
Query: 421 catgctttactgaaggcagtaagcaattctaaagatggctatctctatcaactatcccac 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 catgctttaccgaaggcagtaagcaattctaaagatggctatctctatcaactatcccac 679
Query: 481 cagaaaataaaagaacaataacggtcatctggaaaaaaa-tgaatttaaaaaggtcagct 539
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 680 cagaaaataaaagaacaatgacggtcatctggaaaaaaaatgaatttaaaaaggtcagct 739
Query: 540 caccaaaatgaagcagaaagaaaagctaactaaattgagaactgttgagagggagagaga 599
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 740 caccaaaatgaagcagaaagaaaagctaactaaattgagaactg--gagagagagagaga 797
Query: 600 gagagagagagagagagagagagagagagagagagag 636
|||||||||||||||||||||||||||||||||||||
Sbjct: 798 gagagagagagagagagagagagagagagagagagag 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space: 642276
Effective search space used: 642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|