BAC Information

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BAC

Clone NameMSMg01-329B05
Chromosome15 (Build37)
Map Location 35,974,051 - 36,148,759
singlet/doubletdoublet
Overlap geneRgs22, Fbxo43, 1700074I03Rik, Polr2k, Spag1
Upstream geneStk3, Osr2, Vps13b, EG666183, Cox6c
Downstream geneRnf19, LOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik, Pabpc1, LOC626746, Ywhaz, Zfp706, LOC670911, LOC667492, LOC100041288
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329B05.T7 (MSMg01no329_b05.b1)MSMg01-329B05.TJ (MSMg01no329_b05.g1)
ACCAG446005AG446006
length786733
length of high quality
(start - end)
190 (45 - 234)595 (77 - 671)
definitionCHROMAT_FILE: MSMg01no329_b05.b1 PHD_FILE: MSMg01no329_b05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:24 2005CHROMAT_FILE: MSMg01no329_b05.g1 PHD_FILE: MSMg01no329_b05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,974,051 - 35,974,236)(36,148,168 - 36,148,759)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGTCAGGACATGACTACAAGTTACAATAACATGACTGGGATAAA
GATAATGAGAAAATGTGGTAAATAATATCAGTAAGCCAAATGTTACTTTG
CTTGGGTTTGGAGAGAGATCTGGAATTTCCCTAAAGTCAGAGACTGAGGA
GTCTCTAGTTTTCCCAAAGCTTAGAAACATCTTGCNTNNAAGTGNNAGTC
TAGCTTCTTCCCCCCCCCNNNNNNNNNNNNNAAAAAAAAAAAAAAACACC
ACACCCACCCCNCCCCCCCCCCACCCCCCCCNNCCCCCAAAAAACAACAA
CCCCCACCACACANACACAAAAAAACCAACACAACAACCCCCCCCCCCAC
CCCCCAAACCCCCCNCCCCCCAAAACCACCACACCCAACACCCCACACCC
CCAAACCAAAACCACCAACCACACCAAACCCCCCACCAACCACACCCACA
ACCACAACACCCCCCCACCCAAACCCATACTTACCTATTTCCCCCCCTCT
TTTTTTTTTACCCACTTTTTTACTGCCTGTGGNTGTGGGGNGGGGCCCAC
AAATNCTATAAACAAATAATAAAAATACCNTCCCTNCCGCTTTTNTTCTT
TTTTTATATGTACCACCAATACACCCCCTTCAATCACGGCTATCGACCCC
ACTTTGTTGTGATCCCCCCTTCCCTTTTTTTTCTTTTTTCTGATTTGCGC
ACCCCCATTACCGCCCACCCCCCACCTCTCCCTATN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAACAACTGCCTAGCATGCATGA
GGCCCAGGTTCAATCCCAGAGCTGCAAAAGGACAGAAAAGGTGAGGACAG
AAGGGGCGGGGGGAGCAAGGTGTGGTGGCGCACGCCTTTGATCCCAGTCC
TTGGGAAGCAGAGGCAGGAGGATCTCTGAGTTTGAAGGCAGCCTGGTTTA
CAGAGTAGTTACAGGACAGTCAGGGCCTCAACAAACCAAAACATAGACAG
AGAAAAAGAAAGAAAAAAAGAGAGCGGGCATTGCCAGGTAGAAGATAGGC
AAATTAAAGGCAAATCCCCCAAGCCTAGGTTTACATAAGCTTTCTATGTT
GAAAGCACACTCACACAACACCTTTTAATTCAGGATATCAACCTCACAAC
ACACTGCAGCTACGACTGTAACTCACATCCTTATGAAGCGTGTAGTAAAA
TGGCAAGAAAAGGAATTCACAAAAAGAAACTCATTGCAGGGCAGTGCTCC
CCCACAGCCCATCCACACTTGGCAGTCCTCCCCTGATCCCATCCTCACTT
GGGAGTTCTTTCTTGCTTTCCTTAATAAATCTATTTTGCTTTAGTAAAAA
CATACACACACAGTGGGAGCTCGCAAAGAACATAACGATTGAAATGGACA
CCCAAGGAGGCCATTGTGGGCACTGAGAAAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_b05.b1 MSMg01no329_b05.b1 CHROMAT_FILE:
MSMg01no329_b05.b1 PHD_FILE: MSMg01no329_b05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:24 2005
         (190 letters)



>mm_chr15_35973847_35974436
          Length = 590

 Score =  352 bits (182), Expect = e-102
 Identities = 185/186 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagtcaggacatgactacaagttacaataacatgactgggataaagataatga 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagtcaggaaatgactacaagttacaataacatgactgggataaagataatga 264

                                                                       
Query: 65  gaaaatgtggtaaataatatcagtaagccaaatgttactttgcttgggtttggagagaga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaaaatgtggtaaataatatcagtaagccaaatgttactttgcttgggtttggagagaga 324

                                                                       
Query: 125 tctggaatttccctaaagtcagagactgaggagtctctagttttcccaaagcttagaaac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctggaatttccctaaagtcagagactgaggagtctctagttttcccaaagcttagaaac 384

                 
Query: 185 atcttg 190
           ||||||
Sbjct: 385 atcttg 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no329_b05.g1 MSMg01no329_b05.g1 CHROMAT_FILE:
MSMg01no329_b05.g1 PHD_FILE: MSMg01no329_b05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:24 2005
         (595 letters)



>mm_chr15_36147768_36148762
          Length = 995

 Score = 1129 bits (584), Expect = 0.0
 Identities = 590/592 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaacaactgcctagcatgcatgaggcccaggttcaatcccagagctgcaaaaggacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 992 agaacaactgcctagcatgcatgaggcccaggttcaatcccagagctgcaaaaggacaga 933

                                                                       
Query: 61  aaaggtgaggacagaaggggcggggggagcaaggtgtggtggcgcacgcctttgatccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 932 aaaggtgaggacagaaggggcggggggagcaaggtgtggtggcgcacgcctttgatccca 873

                                                                       
Query: 121 gtccttgggaagcagaggcaggaggatctctgagtttgaaggcagcctggtttacagagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 gtccttgggaagcagaggcaggaggatctctgagtttgaaggcagcctggtttacagagt 813

                                                                       
Query: 181 agttacaggacagtcagggcctcaacaaaccaaaacatagacagagaaaaagaaagaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 agttacaggacagtcagggcctcaacaaaccaaaacatagacagagaaaaagaaagaaaa 753

                                                                       
Query: 241 aaagagagcgggcattgccaggtagaagataggcaaattaaaggcaaatcccccaagcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 aaagagagcgggcattgccaggtagaagataggcaaattaaaggcaaatcccccaagcct 693

                                                                       
Query: 301 aggtttacataagctttctatgttgaaagcacactcacacaacaccttttaattcaggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 aggtttacataagctttctatgttgaaagcacactcacacaacaccttttaattcaggat 633

                                                                       
Query: 361 atcaacctcacaacacactgcagctacgactgtaactcacatccttatgaagcgtgtagt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 632 atcaacctcacaacacactgcagctacgactgtaactcacatccttatgaagtgtgtagt 573

                                                                       
Query: 421 aaaatggcaagaaaaggaattcacaaaaagaaactcattgcagggcagtgctcccccaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 572 aaaatggcaagaaaaggaattcacaaaaagaaactcattgcagggcaatgctcccccaca 513

                                                                       
Query: 481 gcccatccacacttggcagtcctcccctgatcccatcctcacttgggagttctttcttgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gcccatccacacttggcagtcctcccctgatcccatcctcacttgggagttctttcttgc 453

                                                               
Query: 541 tttccttaataaatctattttgctttagtaaaaacatacacacacagtggga 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tttccttaataaatctattttgctttagtaaaaacatacacacacagtggga 401


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)