BAC Information

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BAC

Clone NameMSMg01-330I03
Chromosome15 (Build37)
Map Location 87,122,328 - 87,122,615
singlet/doubletsinglet
Overlap genenone
Upstream geneTbc1d22a, LOC100042309
Downstream geneAW049604, LOC100042329, LOC100042340
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330I03.T7 (MSMg01no330_i03.b1)MSMg01-330I03.TJ (MSMg01no330_i03.g1)
ACCAG447045AG447046
length818754
length of high quality
(start - end)
---289 (77 - 365)
definitionCHROMAT_FILE: MSMg01no330_i03.b1 PHD_FILE: MSMg01no330_i03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:13 2005CHROMAT_FILE: MSMg01no330_i03.g1 PHD_FILE: MSMg01no330_i03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGCGNAGNNNAAANN
NNNNNNNNNNNNNNNGNNNNNNTNNNNNNNNANANNNAAAAAAAAAAAAT
NNNNAACTANNTTAAATTATANTTACACCTATCCTTGTCGGGCGGGGTGA
TCACACTATTATATCTCCTTCCTTCTTAAAGCTGGTATTTGTGGTCTATA
ACATATATAAAAATAAATTAAAAACTCTCTCCTAAATTTATAAATTGCCC
CNNNNNNAATCTCCAGGAAGTAAATTGTTGTCCCCCNACACAACAGAATG
GGTTTTAAAAGAAACCCTTAACCTTAGGGGGGCTTTTTCAGTTTTTCCAC
CCCCCAATAACTTTTCCCATTTTTTTACGCCTTCCCAAGAAAAAAAGAAG
GGGCTATAAACTTGAAAAAAAAACAGGAAATTTTCCTTGTGAAACTTTTT
TCCCTTTCAAAAAAATTCCTGGGGAATTTTTCCCCGGTTTGGTTTGGGGT
GGAAAAAAAAAAAAATTCCTTGGGGAAAGGGCTTCCACCCTGGGAGAAAC
TTTTTCCTTTTGGAAACACCTAAAAGGAGGGCCTCCTAAAAAAAAAAAAA
GGGGCCAAAAAAAATGTTGTGGAAACAGGGGGGGACCAACAAAAAAAAAA
GAGGGGGGGGGGGGGGGGGCCCCCCCTTTTTGTTGGATTCAAAAACAAAC
TCACGGTGTGGGGGGGGGAAAAAAATTCTTATCCTATAANAACCCCATGC
AGGCTCTTTGTTTGTGGTTTNTCTTTTTATACTCCCCACACCCCCCCTTT
TATTTAAGATATGGGCGG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACAGTTCAGCAATAGCATGAGTA
AAGAAAGAGAGCCTGGGTGAAGGGCCCCCAAAAGAGACTGGCACATATGT
CATGTCCTTATTTTGCAGAGAGGTGTTCCAGTGTACCTGAAGTGATAGCT
GGCCAGGCCATCCTATCCAGCGATCAGCTCCTTCTGAGGCCTGTACCCAG
TGCCTACAGTGCTCCTCGGGATAAAGTCTGAGATGATGACTCTGGGCATG
GAGGGAGGGAGGAGAGTGTGCATAACACTCACGGTGGAGTGTAATCCATC
CCTTCCCGAATCACTGATCATCCTTATGACTCCCACACCCACGGATGCTA
CATTAGCATTGCAGTGGGAAAGGATGCATCTATCACAAAGCTCTTGCATG
TCCCTAGGACCACATCCCTTGTGTGTGACCCCCCACTAGACCCTGCCATC
GTTGGGTGTAGAACAGTTCTGAACCTGATGCTCTTCTTGCAATATTCTTA
TCATTACCCTTTACTGCTGTGTCACTAGAAACAATACTACAAACCCTGTC
CACACCTTTCCCCTTTTAAAGCAAGAGATCAAATTAAATGAAAGGACAGC
AATCCATACAAAACCCACACAGACCCGATGTTACACAGCACCACTGTTCC
CAGCTGAACCATCTGCAGCTGACCACGGAGGATATACATTTTTGTGGAGT
AACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_i03.g1 MSMg01no330_i03.g1 CHROMAT_FILE:
MSMg01no330_i03.g1 PHD_FILE: MSMg01no330_i03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:14 2005
         (289 letters)



>mm_chr15_87122128_87122815
          Length = 688

 Score =  507 bits (262), Expect = e-148
 Identities = 282/292 (96%), Gaps = 7/292 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagttcagcaatagcatgagtaaagaaagagagcctgggtgaagggcccccaa---aa 57
           |||||||||||||||||||||||||||||||||||||||||||||||||    ||   ||
Sbjct: 201 cacagttcagcaatagcatgagtaaagaaagagagcctgggtgaagggc----aagaaaa 256

                                                                       
Query: 58  gagactggcacatatgtcatgtccttattttgcagagaggtgttccagtgtacctgaagt 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 gagactggcacatatgtcatgtccttattttgcagagaggtgttccagtgtacctgaagt 316

                                                                       
Query: 118 gatagctggccaggccatcctatccagcgatcagctccttctgaggcctgtacccagtgc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gatagctggccaggccatcctatccagcgatcagctccttctgaggcctgtacccagtgc 376

                                                                       
Query: 178 ctacagtgctcctcgggataaagtctgagatgatgactctgggcatggagggagggagga 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ctacagtgctcctcgggataaagtctgagatgatgactctgggcatggagggagggagga 436

                                                               
Query: 238 gagtgtgcataacactcacggtggagtgtaatccatcccttcccgaatcact 289
           |||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 437 gagtgtacataacacacatggtggagtgtaatccatcccttcccgaatcact 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 688
Length adjustment: 9
Effective length of query: 280
Effective length of database: 679
Effective search space:   190120
Effective search space used:   190120
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)