Query= MSMg01no334_k06.b1 MSMg01no334_k06.b1 CHROMAT_FILE:
MSMg01no334_k06.b1 PHD_FILE: MSMg01no334_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:08 2005
(310 letters)
>mm_chr15_98064226_98064934
Length = 709
Score = 437 bits (226), Expect = e-127
Identities = 275/304 (90%), Gaps = 22/304 (7%)
Strand = Plus / Minus
Query: 5 gaattccatccaaattacgacaccctccaagagcagagcctttgtcagttagggacagct 64
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 668 gaattccatccaaattaagacaccctccaagagcagagcctttgtcagttagggccagct 609
Query: 65 tcccgttggtgaccagtaaaaatcagctccttcctccttcacattgaaagaccattggct 124
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tcccattggtgaccagtaaaaatcagctccttcctccttcacattgaaagaccattggct 549
Query: 125 gtcctactaccccccaccccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 184
| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 548 gccctactacccccc-ccccgtgtgtgtgtgtgtgtgtgtgt------------------ 508
Query: 185 gtttactgcagctcacaatcctataaatgtccaggggatttgcaaacataattcatcaca 244
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 507 --ttactgcagctcacaatcctataaatgtccaggggatttgcaa-cataattcatcaca 451
Query: 245 ccttcgctccgatgtaaggatcgacaggaccttttactccgcctgaatgtgtctcagctc 304
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 450 ccttcgctccgatgtaaggatcgacaggacccatgactccgcctgaatgtgtctcagctc 391
Query: 305 atgg 308
||||
Sbjct: 390 atgg 387
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 709
Length adjustment: 9
Effective length of query: 301
Effective length of database: 700
Effective search space: 210700
Effective search space used: 210700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_k06.g1 MSMg01no334_k06.g1 CHROMAT_FILE:
MSMg01no334_k06.g1 PHD_FILE: MSMg01no334_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:08 2005
(465 letters)
>mm_chr15_97877988_97878852
Length = 865
Score = 853 bits (441), Expect = 0.0
Identities = 459/465 (98%)
Strand = Plus / Plus
Query: 1 aggaccttcggaagagcagtccgtgctcttaacctttgagccatctctccagccccagat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaccttcggaagagcagtccgtgctcttaacctttgagccatctctccagccccagat 260
Query: 61 tgatatctttgaaatgtaattcaagacagaatatacaataactcttattaacattaagct 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatatctttgaaatgtaattcaaaacagaatatacaataactcttattaacattaagct 320
Query: 121 gatgtcttcatgcttccagaccacagaaatgctaaacccccacatgcacaaggcaagtca 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgtcttcatgcttccagagcacagaaatgctaaacccccacatgcacaaggcaagtca 380
Query: 181 gagctaggtaggaagctggggctggtggcaccacaaacatgcttgttccttgcctcacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagctaggtaggaagctggggctggtggcaccacaaacatgcttgttccttgcctcacct 440
Query: 241 gaggcggcgtcgggatgacctgtaacttccgaacctaagcatcccctcctctaaagccga 300
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 gaggcggcggcgggatgacctgtaacttccgaacctaagcatcccctactctaaagccga 500
Query: 301 ggcatcactatgaaattccacctcccctccatagcaaagcagagacacagaacatatggc 360
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 501 ggcatcactatgaaattccacctctcctccatagcaaagcagagacacagatcatatggc 560
Query: 361 ccactgggctggctatgctgcctacgtagatctctttctcatgccatcaaaaataaagga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccactgggctggctatgctgcctacgtagatctctttctcatgccatcaaaaataaagga 620
Query: 421 gttactcacagctagacaccagtgcacacccaagtgaatgggcac 465
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttactcacagctagacaccagtgcacacccaagtgaatgggcac 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space: 389025
Effective search space used: 389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
