BAC Information

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BAC

Clone NameMSMg01-337B01
Chromosome15 (Build37)
Map Location 47,491,921 - 47,492,172
singlet/doubletsinglet
Overlap geneCsmd3
Upstream geneLOC100039438, LOC665130, LOC100039485, LOC100039493
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337B01.T7 (MSMg01no337_b01.b1)MSMg01-337B01.TJ (MSMg01no337_b01.g1)
ACCAG451933AG451934
length730723
length of high quality
(start - end)
---250 (144 - 393)
definitionCHROMAT_FILE: MSMg01no337_b01.b1 PHD_FILE: MSMg01no337_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:19 2005CHROMAT_FILE: MSMg01no337_b01.g1 PHD_FILE: MSMg01no337_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTATTTGTGCATGAAAATTCTGTCGACAAGATAGAGATGTGCAA
AGGAAGAAAGATGTGTGTATCAAAAAATCGTTTCTTATACTGTATGATCA
TATACCCTGGGTAGGAGAGTGCCGGCTTACAGCCTAATTTCTGGGTTCAG
GTTTTAGCTTAATAACTTGAAGTGATTGATGTTGTATTCAGACAAATTAC
CATTTTAGACCACCCTGACATTCTCATCTTACAGAACAGTGATGCTAAAT
GGTTAAATCATGGGATCACATTACAATTTAATTTCACCACATGAGATAAT
GCTTGGCATACAGTCTAACACGAGGAGACTCCTTTGTATACATTGCATTT
ATATGAAACATTCTCTAACCCTACACCTTCTCCCTCAAAAGAAGAAAAAG
GTGGACAAATCAAACAACCTAGATTTGCAGTTGAACTTGATCTTAAAATT
CAGGTGGCTTGAAAATGAAGTAATTATTTGCAGTTATTTATTTATGACAT
TCAACGTTAAGTTGTATAAATAAGCATCGAATTCTCAAATATGTACACCT
CCAGTTCTCCTAATTGTGTCACACAGCTTACTGAGGGGAGGGCTGTGGGA
TTAAACAGAGACGGGTCCTTTCATTCTTCCTATCTACACCGCTAGCTCTT
TGGGATGATATGAATAAACGCTGGCCTGTG
CTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGGAAATTGCTGAAATTA
CGCATACGCAATTAAGAAAACAGAAAAAGAGAAATGGCTTCAGGAAATCT
ATTAAGTCCCAGACCCCGAGAATTTTTTGGCATACTATCTTGTCTCCAAA
AGAAATTTACAGTACATCACAGAAAGACCTTTAAGAATTGTATATTTGGA
ATAACTTATTTTAAATTACTAAGAATTTAATTGGTGACCCTGCATGTTGT
TCTTGCTTTTTTTCTTACATTTTTGTCATCACGTATTTGATCTTAGCATT
CATAAAGACTGTGTGGGAATCCAAATCAGGTAAACACGTTGTGTTTAGTG
TTCTGTGCATGACACTGAGTTACACTCTCTAATTGGATTTATTCAACTTA
CTAAATATTATTAAGGGACCATAAAATTCTCATTGATATTTTGTCCAAGA
AAACCACCCCCCCCAAAAAAAAATCAAAAAGGCTAATACTATTGAAGGGA
CTTCTTTTGCCATAGGTACAGTCACAATGTGTGATAGGTACTATAGATAC
TATTGAGCACATGGGAAATGTTTGATACATACTAGGCCAGGATTTATTCT
CTCAAAGATAACTAACTAGTGTCTCCCTTCCCAGTTCATTTAAGATGGTT
TGTTACAAATTATGGCCTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_b01.g1 MSMg01no337_b01.g1 CHROMAT_FILE:
MSMg01no337_b01.g1 PHD_FILE: MSMg01no337_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:19 2005
         (250 letters)



>mm_chr15_47491721_47492372
          Length = 652

 Score =  371 bits (192), Expect = e-107
 Identities = 237/252 (94%), Gaps = 2/252 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaatctattaagtcccagaccccgagaattttttggcatactatcttgtctccaaaaga 60
           |||||||||||| ||||| ||||||||| ||||||||||||||| ||||| |||||||||
Sbjct: 201 gaaatctattaactcccaaaccccgagatttttttggcatactaccttgtttccaaaaga 260

                                                                       
Query: 61  aatttacagtacatcacagaaaga-cctttaagaattgtatatttggaataacttatttt 119
           |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 aatttacagtacatcacaaaaagaacctttaagaattgtatatttggaataacttatttt 320

                                                                       
Query: 120 aaattactaagaatttaattggtgaccctgcatgttgttcttgctttttttcttacattt 179
           ||| | |||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 321 aaactgctaagaatttaattggtgaccctgcatgttgttcttgctttttttcatagattt 380

                                                                       
Query: 180 ttgtcatcacgtatttgatcttagcattcataaagactgtgtgggaatccaaatcaggta 239
           ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 381 ttgtcatcacgtatttggtcttagcattcataaagactgtgtgggaatccaagtcagtta 440

                       
Query: 240 aaca-cgttgtg 250
           |||| |||||||
Sbjct: 441 aacaacgttgtg 452


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 652
Length adjustment: 9
Effective length of query: 241
Effective length of database: 643
Effective search space:   154963
Effective search space used:   154963
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)