BAC Information

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BAC

Clone NameMSMg01-341D23
Chromosome15 (Build37)
Map Location 22,273,894 - 22,436,263
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh12, LOC100040351
Downstream geneEG545091, Cdh18, LOC624863
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341D23.T7 (MSMg01no341_d23.b1)MSMg01-341D23.TJ (MSMg01no341_d23.g1)
ACCAG455090AG455091
length786800
length of high quality
(start - end)		399 (39 - 437)409 (69 - 477)
definitionCHROMAT_FILE: MSMg01no341_d23.b1 PHD_FILE: MSMg01no341_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:27 2005CHROMAT_FILE: MSMg01no341_d23.g1 PHD_FILE: MSMg01no341_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,273,894 - 22,274,287)(22,435,855 - 22,436,263)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAATTCT
TTAAGATATCACTTGCTAAAATTACTTTACTGTTATCTGTCTATCATTAC
TCCCATTACCCCGAGAGTGATTATAATATCAAGCAACAGATCACAGGCTT
TGGAAGAAATGAAATGTAATCACAAACCTGCTTCTCTGTAATCCATACTG
AGAAACCTCTTGTCCCCACAATTTCATCAGCTGAAATATGCTTCCCTTAA
CTCATTAATATGCTTTGGAAAAATATCACTAATGAAATCATTATCAACCT
AAGTAAATACACTGGTCCTTATTTGTTTAGCTCTTTATGAAATATTCAAC
TCTGTTAATCAAGAAGGCAGCACTCCAGTAACCAGGATGCTGAGAAAGCC
TTCTTCCAGAAGACTTCACAATGTACAAACTCCAGGAGGCCCAGGAATGT
GATTAGCAAATAAAGACTCTTTTGCTATTCAACCTTGCTTTGCATAAATT
ATGCTACAATAGGATAAGGTCATACAATTGTGGGAAAAATGTTTGAATAT
GTTACTCTATGGCCAAAAAGTCTCTAAATGAAGACATTTTTTTTTCTGCT
ACGAAAACAATTTGGGCGTTATGACAACTTATAATTCTTTAACTCGCCCT
CGGGCTTGGCAAAAATCTGGAAAAAGAACCTGTTCCTCCCCTTTTTTCCT
AATTCACCTTACACCCTATTCCTTTGTTTCCTCCTATTAAACAACAAATT
TTTTTTCCCTGGGCCGACTGCACATTTTATATTTAT

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTATCCTGCACCATTCACTGCTGGATCTTGG
TTATGCCTCGCTGGCCATGCTAGGTCTGCCACCTCTGCTGCTGGTGCTGC
AGAGTAGTTGACAAGAGATGGCCCAGGCCCTCCAAACCTCCTCACTTCTC
TTCTAAGAACTGTAACCTTCCTGACTTTTCTGGCTGCACCAGAGTCTCAA
GGAACCTATTTGTCCCTGGCTCCGCTTCGCCTTCCTCAGTCTGGTTTGGC
ATAGAAATTTCTGAGTCCCAGAAGAAAGTGGGCAGGCAACAGAAAAGAGA
GCTAGATAATTTTTATGAGGATCTCCTACCAGCTTATAGTAGCCACCAAC
GAGAATAAAAATATATTAGATGAGCATACTCTCATTTTATAAAAAATATT
CATCTACTTGTAATCACATGGAAATGTACACCTATATGGGTATTTTCTAT
TAAAAATAGACAAGTTCAATCTTCCGAGGATTTAAGGGAGAACTTTTAAG
TCTAGATTTGCGGATCTAATAAATCCTCCAAATTTGATTTGGCCTCAAAA
AAAAAGCTTTATTTTCCCCTTTTTTTTTAAACATAAAAGGGTGGAAGGGG
GCCCACGGTATTTTTTTCTGAACAAACCTTTTGAAATATAAGGGTGTCAG
CGCCCACCCCCATTTTTTTTTACCTTCACTTATATCGTTTTTTCAACTTA
ATGCAAACATTCTTCTTGGCCCGAATAAACATTTCCTTTTCACATATCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_d23.b1 MSMg01no341_d23.b1 CHROMAT_FILE:
MSMg01no341_d23.b1 PHD_FILE: MSMg01no341_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:27 2005
         (399 letters)



>mm_chr15_22273689_22274487
          Length = 799

 Score =  754 bits (390), Expect = 0.0
 Identities = 393/394 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctttaagatatcacttgctaaaattactttactgttatctgtctatcattactcc 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctttaagatatcacttgctaaaattactttactgttatctgtctatcattactcc 265

                                                                       
Query: 66  cattaccccgagagtgattataatatcaagcaacagatcacaggctttggaagaaatgaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cattaccccgagagtgattataatatcaagcaacagatcacaggctttggaagaaatgaa 325

                                                                       
Query: 126 atgtaatcacaaacctgcttctctgtaatccatactgagaaacctcttgtccccacaatt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 atgtaatcacaaacctgcttctctgtaatccatactgagaaacctcttgtccccacaatt 385

                                                                       
Query: 186 tcatcagctgaaatatgcttcccttaactcattaatatgctttggaaaaatatcactaat 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tcatcagctgaaatatgcttcccttaactcattaatatgctttggaaaaatatcactaat 445

                                                                       
Query: 246 gaaatcattatcaacctaagtaaatacactggtccttatttgtttagctctttatgaaat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gaaatcattatcaacctaagtaaatacactggtccttatttgtttagctctttatgaaat 505

                                                                       
Query: 306 attcaactctgttaatcaagaaggcagcactccagtaaccaggatgctgagaaagccttc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 attcaactctgttaatcaagaaggcagcactccagtaaccaggatgctgagaaagccttc 565

                                             
Query: 366 ttccagaagacttcacaatgtacaaactccagga 399
           ||||||||||||||||||||||||||| ||||||
Sbjct: 566 ttccagaagacttcacaatgtacaaaccccagga 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no341_d23.g1 MSMg01no341_d23.g1 CHROMAT_FILE:
MSMg01no341_d23.g1 PHD_FILE: MSMg01no341_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:27 2005
         (409 letters)



>mm_chr15_22435655_22436463
          Length = 809

 Score =  752 bits (389), Expect = 0.0
 Identities = 404/409 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctatcctgcaccattcactgctggatcttggttatgcctcgctggccatgctaggtctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tctatcctgcaccattcactgctggatcttggttatgcctcgctggccatgctaggtctg 550

                                                                       
Query: 61  ccacctctgctgctggtgctgcagagtagttgacaagagatggcccaggccctccaaacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ccacctctgctgctggtgctgcagagtagttgacaagagatggcccaggccctccaaacc 490

                                                                       
Query: 121 tcctcacttctcttctaagaactgtaaccttcctgacttttctggctgcaccagagtctc 180
           |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
Sbjct: 489 tcctcacttctcttctaagaactgtaacattcctgacctttctggctgcaccagagtccc 430

                                                                       
Query: 181 aaggaacctatttgtccctggctccgcttcgccttcctcagtctggtttggcatagaaat 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aaggaacctatttgttcctggctccgcttcgccttcctcagtctggtttggcatagaaat 370

                                                                       
Query: 241 ttctgagtcccagaagaaagtgggcaggcaacagaaaagagagctagataatttttatga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ttctgagtcccagaagaaagtgggcaggcaacagaaaagagagctagataatttttatga 310

                                                                       
Query: 301 ggatctcctaccagcttatagtagccaccaacgagaataaaaatatattagatgagcata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ggatctcctaccagcttatagtagccaccaacgagaataaaaatatattagatgagcata 250

                                                            
Query: 361 ctctcattttataaaaaatattcatctacttgtaatcacatggaaatgt 409
           |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 249 ctctcattttataaaaaatattcatctacttgtaatcaaatggaaatgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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