BAC Information

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BAC

Clone NameMSMg01-342P12
Chromosome15 (Build37)
Map Location 75,102,118 - 75,102,549
singlet/doubletsinglet
Overlap geneLy6f
Upstream geneLOC100040984, Bai1, 1700016M24Rik, Arc, Jrk, 4933427E11Rik, Psca, 4930572J05Rik, Slurp1, Lypd2, 2300005B03Rik, Lynx1, Ly6d, D730001G18Rik, Ly6k, Gml, Hemt1, Cyp11b1, Cyp11b2, 2010109I03Rik, LOC625653, Ly6e, Ly6i, LOC666240, LOC100041528, Ly6a, Ly6c, LOC546642, EG625737, LOC100041546, I830127L07Rik, LOC100041070, LOC546644, LOC100041087, BC025446, LOC100041092
Downstream geneLOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina, Spatc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342P12.T7 (MSMg01no342_p12.b1)MSMg01-342P12.TJ (MSMg01no342_p12.g1)
ACCAG456393AG456394
length725708
length of high quality
(start - end)
333 (58 - 390)432 (65 - 496)
definitionCHROMAT_FILE: MSMg01no342_p12.b1 PHD_FILE: MSMg01no342_p12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:38 2005CHROMAT_FILE: MSMg01no342_p12.g1 PHD_FILE: MSMg01no342_p12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:38 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GGCGCTATACGACTCACTAATCAGAGAGGATGCGCGGAATTCTTTGTTTA
CATCTGAGTCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACC
TTCTTGAGTTCTTTATATATATAGGATATTAGTCCCTTATCTGATTTAGG
ATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGA
TGGTGTCTTTTGCCTTACAGAAGCTTTGCTGTTTTATGAGGTCCCATTTG
TCAATTCTTGATCTTACAGCACAAGCCACTGCTGTTCTATTCAGGAATTT
TTTTTCTGTGCCCATATCTTCGAGGCTATTCCCCACTTTCTCCTCTATAG
GCTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCTTCTTTTATTTC
CCCCCACTACAAGGAGATAGGAATGGATCAATTTGCATTCTTCTACATGA
TAACCACCAGTTGTGCCAGCATCATTTGTCGAATATGCTGTCTTTTTTCC
TCTGGATGGTTTTAGCTCTCTTGTCCAAGATTAAGTGACCCTACGTGTGT
GGACTCATTTCTGGGTTTTCTATTCTATTCCATCGTTCTTATTGCCTTTC
GCTACCCCCTTACCTAGCATTTTTTTATCTACATTGCCTTTTGTGTTCCC
CCTTTTATTTTTTTTAGTCGGTGTATTTCTTCCGTATGTGTGTGTTTACC
CTTTGACCCCTGATTTTTTTTTTTT
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGCCTCTACCCTCTGCTAGCCACGGGCCTCCAGGGC
CAAGATTAGCAAGCCACAACAAAATGGCATTCTAGGAAGTACATATCTGA
AATTCCTAGAGAGGAGTGGGGTATTTACCACGCAGGAGCTATAAAGTTGA
AACAACGTATTCCACAAACACTACCCACACCTTGGAGCTTCAATATCTCA
TAATTCATCACTAGAGGGTTCCAGGAAGGAATAGTTGCACATGAGGATAA
AACAACAAGGGTGGAGGTCCTTGGAAGGACATTTTACAGCAAGGTCTGCA
GGAAGACCGAGCCCAGATTTAACAGAAGCACCCTTGTCATGGTCCAGGTG
CTGCCTCCAGTGGAAAATGGTGCATTGCAGAGGTCTTCCTTGCAACAGGA
AGTATTCACGTTGACAGTAGTACCCAGGATCTCCATATTTTCAAGATTAG
CAGGGCAGAAAGGAAAGCAGAGTTTGTTCTTTATTTTCCTTCTTTGAGAG
TCTGCAAAATATCAGGGAGTGACTCACTTATTATGTAGGGGCAACAGAGA
ATCCCAATGTCTGGGCCATATGCCATCAGGTTGTTTTACCCAGACTCGTT
TCTAAGACATATCGCAGTCAGACTTGTTAGCTCAGACTTGTTTTCCCCTT
AACTTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_p12.g1 MSMg01no342_p12.g1 CHROMAT_FILE:
MSMg01no342_p12.g1 PHD_FILE: MSMg01no342_p12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:38 2005
         (432 letters)



>mm_chr15_75101918_75102749
          Length = 832

 Score =  768 bits (397), Expect = 0.0
 Identities = 424/433 (97%), Gaps = 2/433 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcctctaccctctgctagccacgggcctccagggccaagattagcaagccacaacaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tgcctctaccctctgctagccacgggcctccagggccaagattagcaagccacaacaaaa 573

                                                                       
Query: 61  tggcattctaggaagtacatatctgaaattcctagagaggagtggggtatttaccacgca 120
           |||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||
Sbjct: 572 tggcattctaggaagtacatatttgaaattcctagagaggagtggggcatttaccaagca 513

                                                                       
Query: 121 ggagctataaagttgaaacaacgtattccacaaacactac-ccacaccttggagcttcaa 179
           || ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 512 ggggctataaagttgaaacaacgtattccacaaacactactcc-caccttggagcttcaa 454

                                                                       
Query: 180 tatctcataattcatcactagagggttccaggaaggaatagttgcacatgaggataaaac 239
           ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 453 tatctcataattcatcactagagggctccaggaaggaatagttgcaaatgaggataaaac 394

                                                                       
Query: 240 aacaagggtggaggtccttggaaggacattttacagcaaggtctgcaggaagaccgagcc 299
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 393 aacaagggtggaggtccttggaaggaccttttacagcaaggtctgcaggaagaccgagcc 334

                                                                       
Query: 300 cagatttaacagaagcacccttgtcatggtccaggtgctgcctccagtggaaaatggtgc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cagatttaacagaagcacccttgtcatggtccaggtgctgcctccagtggaaaatggtgc 274

                                                                       
Query: 360 attgcagaggtcttccttgcaacaggaagtattcacgttgacagtagtacccaggatctc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 attgcagaggtcttccttgcaacaggaagtattcacgttgacagtagtacccaggatctc 214

                        
Query: 420 catattttcaaga 432
           |||||||||||||
Sbjct: 213 catattttcaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 832
Length adjustment: 9
Effective length of query: 423
Effective length of database: 823
Effective search space:   348129
Effective search space used:   348129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)