MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-343L04
Chromosome	15 (Build37)
Map Location	59,523,932 - 59,673,616
singlet/doublet	doublet
Overlap gene	none
Upstream gene	Tmem65, EG546638, Trmt12, Rnf139, Tatdn1, Ndufb9, Mtss1, LOC100040330, EG268809, LOC665565, Sqle, E430025E21Rik, Nsmce2, Trib1
Downstream gene	LOC665602, EG632248, LOC665613, 4933412E24Rik, LOC100040266, LOC623048, LOC211832, LOC623094, EG632412, LOC100040311, D330050I23Rik, 9930014A18Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	Tmem65 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74868 MGI:1922118
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG546638 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:546638 MGI:3644823
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	Trmt12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68260 MGI:1915510
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rnf139 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75841 MGI:1923091
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tatdn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69694 MGI:1916944
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ndufb9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66218 MGI:1913468
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mtss1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:211401 MGI:2384818
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040330 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040330
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	EG268809 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:268809 MGI:3647181
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 1535 ESTs, 14 Proteins

name	LOC665565 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665565
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 43 ESTs, 2 Proteins

name	Sqle (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20775 MGI:109296
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	E430025E21Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:223593 MGI:2146110
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nsmce2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68501 MGI:1915751
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trib1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:211770 MGI:2443397
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665602 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665602
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 Proteins pseudo : _no_value

name	EG632248 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:632248 MGI:3647452
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 119 ESTs, 2 Proteins

name	LOC665613 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665613
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins pseudo : _no_value

name	4933412E24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71088 MGI:1918338
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	LOC100040266 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040266
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC623048 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:623048
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins pseudo : _no_value

name	LOC211832 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:211832
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins pseudo : _no_value

name	LOC623094 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:623094
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4503 ESTs, 31 Proteins pseudo : _no_value

name	EG632412 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:632412 MGI:3648861
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC100040311 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040311
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	D330050I23Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:399603 MGI:3026924
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 149 ESTs, 3 Proteins

name	9930014A18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320469 MGI:2444091
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs

name	Tmem65 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119360291 GeneID:74868 MGI:1922118
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 65 transcript_id : NM_175212.4

name	EG546638 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149266602 GeneID:546638 MGI:3644823
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : predicted gene, EG546638 transcript_id : XM_621400.4

name	Trmt12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118150644 GeneID:68260 MGI:1915510
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tRNA methyltranferase 12 homolog (S. cerevisiae) transcript_id : NM_026642.2

name	Rnf139 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377504 GeneID:75841 MGI:1923091
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 139 transcript_id : NM_175226.3

name	Tatdn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801775 GeneID:69694 MGI:1916944
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TatD DNase domain containing 1 transcript_id : NM_175151.3

name	Ndufb9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142349573 GeneID:66218 MGI:1913468
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 transcript_id : NM_023172.3

name	Mtss1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21450158 GeneID:211401 MGI:2384818
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : metastasis suppressor 1 transcript_id : NM_144800.1

name	LOC100040330 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149266611 GeneID:100040330
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : similar to Ubtf protein transcript_id : XM_001475007.1

name	EG268809 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94398661 GeneID:268809 MGI:3647181
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 608 ESTs, 9 Proteins product : predicted gene, EG268809, transcript variant 2 transcript_id : XM_897218.2

name	LOC665565 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149266613 GeneID:665565
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 43 ESTs, 2 Proteins product : similar to Ribosomal protein L17 transcript_id : XM_001475049.1

name	Sqle (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130480 GeneID:20775 MGI:109296
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : squalene epoxidase transcript_id : NM_009270.3

name	E430025E21Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46048299 GeneID:223593 MGI:2146110
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA E430025E21 gene transcript_id : NM_153548.2

name	Nsmce2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142354824 GeneID:68501 MGI:1915751
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : non-SMC element 2 homolog (MMS21, S. cerevisiae) transcript_id : NM_026746.2

name	Trib1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374770 GeneID:211770 MGI:2443397
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tribbles homolog 1 (Drosophila) transcript_id : NM_144549.3

name	EG632248 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149266617 GeneID:632248 MGI:3647452
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 119 ESTs, 2 Proteins product : predicted gene, EG632248 transcript_id : XM_001475231.1

name	4933412E24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94398690 GeneID:71088 MGI:1918338
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : RIKEN cDNA 4933412E24 gene transcript_id : XM_978194.1

name	LOC100040266 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149266607 GeneID:100040266
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040266 transcript_id : XM_001474378.1

name	Tmem65 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70778812 CCDS:CCDS27493.1 GeneID:74868 MGI:1922118
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC74868 protein_id : NP_780421.2

name	EG546638 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149266603 GeneID:546638 MGI:3644823
definition	codon_start : 1 product : similar to ubiquitin-conjugating enzyme E2D 4 (putative) protein_id : XP_621400.4

name	Trmt12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:118150645 GeneID:68260 MGI:1915510
definition	GO_function : GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : tRNA methyltransferase 12 homolog protein_id : NP_080918.2

name	Rnf139 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424858 CCDS:CCDS27494.1 GeneID:75841 MGI:1923091
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence ISS] [Evidence IEA]; GO:0016021 - integral to membrane [Evidence ISS] [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016874 - ligase activity [Evidence IEA] [Evidence ISS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0031396 - regulation of protein ubiquitination [Evidence ISS]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : ring finger protein 139 protein_id : NP_780435.1

name	Tatdn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424744 GeneID:69694 MGI:1916944
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA] codon_start : 1 product : TatD DNase domain containing 1 protein_id : NP_780360.1

name	Ndufb9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789148 CCDS:CCDS27495.1 GeneID:66218 MGI:1913468
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] codon_start : 1 product : NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 protein_id : NP_075661.1

name	Mtss1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450159 CCDS:CCDS27496.1 GeneID:211401 MGI:2384818
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence ISS]; GO:0005737 - cytoplasm [Evidence ISS] [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0030139 - endocytic vesicle [Evidence ISS]; GO:0001726 - ruffle [Evidence ISS] GO_function : GO:0003779 - actin binding [Evidence IDA]; GO:0003785 - actin monomer binding [Evidence ISS]; GO:0005102 - receptor binding [Evidence ISS] GO_process : GO:0007015 - actin filament organization [Evidence IDA]; GO:0030041 - actin filament polymerization [Evidence IDA]; GO:0007155 - cell adhesion [Evidence ISS]; GO:0006928 - cell motility [Evidence ISS]; GO:0030035 - microspike biogenesis [Evidence ISS]; GO:0007517 - muscle development [Evidence NAS]; GO:0007399 - nervous system development [Evidence NAS]; GO:0007169 - transmembrane receptor protein tyrosine kinase signaling pathway [Evidence ISS] codon_start : 1 exception : mismatches in translation product : actin monomer-binding protein protein_id : NP_659049.1

name	LOC100040330 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149266612 GeneID:100040330
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475057.1

name	EG268809 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82957238 GeneID:268809 MGI:3647181
definition	codon_start : 1 product : similar to 60S ribosomal protein L7 isoform 2 protein_id : XP_902311.1

name	LOC665565 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149266614 GeneID:665565
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475099.1

name	Sqle (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678127 CCDS:CCDS27497.1 GeneID:20775 MGI:109296
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0004506 - squalene monooxygenase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0008152 - metabolism [Evidence IEA] codon_start : 1 note : squalene monooxygenase product : squalene epoxidase protein_id : NP_033296.1

name	E430025E21Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46048300 GeneID:223593 MGI:2146110
definition	codon_start : 1 product : hypothetical protein LOC223593 protein_id : NP_705776.2

name	Nsmce2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312038 CCDS:CCDS27498.1 GeneID:68501 MGI:1915751
definition	GO_component : GO:0000151 - ubiquitin ligase complex [Evidence IEA] GO_function : GO:0004842 - ubiquitin-protein ligase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0016567 - protein ubiquitination [Evidence IEA] codon_start : 1 exception : mismatches in translation product : non-SMC element 2 homolog (MMS21, S. cerevisiae) protein_id : NP_081022.1

name	Trib1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21362355 CCDS:CCDS27499.1 GeneID:211770 MGI:2443397
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA] [Evidence ISS]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004860 - protein kinase inhibitor activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] [Evidence ISS]; GO:0043405 - regulation of MAPK activity [Evidence ISS] codon_start : 1 product : tribbles homolog 1 protein_id : NP_653132.1

name	EG632248 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149266618 GeneID:632248 MGI:3647452
definition	codon_start : 1 product : similar to splicing factor, arginine/serine-rich 3 protein_id : XP_001475281.1

name	4933412E24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94398691 GeneID:71088 MGI:1918338
definition	codon_start : 1 product : hypothetical protein LOC71088 protein_id : XP_983288.1

name	LOC100040266 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149266608 GeneID:100040266
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474428.1

name	LOC665602 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665602
definition	number : 2 pseudo : _no_value

name	LOC665602 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665602
definition	number : 1 pseudo : _no_value

name	LOC665613 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665613
definition	number : 1 pseudo : _no_value

name	LOC623048 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:623048
definition	number : 2 pseudo : _no_value

name	LOC623048 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:623048
definition	number : 1 pseudo : _no_value

name	LOC211832 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:211832
definition	number : 1 pseudo : _no_value

name	LOC211832 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:211832
definition	number : 2 pseudo : _no_value

name	LOC211832 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:211832
definition	number : 3 pseudo : _no_value

name	LOC211832 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:211832
definition	number : 4 pseudo : _no_value

name	EG632412 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632412
definition	number : 1 pseudo : _no_value

name	EG632412 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632412
definition	number : 2 pseudo : _no_value

name	EG632412 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632412
definition	number : 3 pseudo : _no_value

name	EG632412 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632412
definition	number : 4 pseudo : _no_value

name	EG632412 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632412
definition	number : 5 pseudo : _no_value

name	EG632412 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632412
definition	number : 6 pseudo : _no_value

name	EG632412 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632412
definition	number : 7 pseudo : _no_value

name	EG632412 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632412
definition	number : 8 pseudo : _no_value

name	EG632412 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:632412
definition	number : 9 pseudo : _no_value

name	LOC100040311 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040311
definition	number : 5 pseudo : _no_value

name	LOC100040311 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040311
definition	number : 4 pseudo : _no_value

name	LOC100040311 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040311
definition	number : 3 pseudo : _no_value

name	LOC100040311 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040311
definition	number : 2 pseudo : _no_value

name	LOC100040311 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100040311
definition	number : 1 pseudo : _no_value

name	LOC623094 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149266621 GeneID:623094
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4503 ESTs, 31 Proteins product : similar to eukaryotic translation elongation factor 1 alpha 1 pseudo : _no_value transcript_id : XR_032168.1

name	D330050I23Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149266622 GeneID:399603 MGI:3026924
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 136 ESTs, 3 Proteins product : RIKEN cDNA D330050I23 gene transcript_id : XR_035243.1

name	9930014A18Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149266623 GeneID:320469 MGI:2444091
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs product : RIKEN cDNA 9930014A18 gene transcript_id : XR_035245.1

clone name	MSMg01-079E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-122O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-064L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298J11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-298K11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-467D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-326J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-477M13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-084D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-233G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269K06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-469B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-165O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-049B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472O17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-535H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-214I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-384O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082K17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331G19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-076E23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101M13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-192D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-316H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111F02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-064E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-527M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467O06
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-172G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-087D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-533D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363A22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-115D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-020A18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236J12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042O14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-252G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022C05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-098A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226A20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209E08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298H23
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-343L04.T7 (MSMg01no343_l04.b1)	MSMg01-343L04.TJ (MSMg01no343_l04.g1)
ACC	AG456944	AG456945
length	785	811
length of high quality (start - end)	357 (38 - 394)	168 (68 - 235)
definition	CHROMAT_FILE: MSMg01no343_l04.b1 PHD_FILE: MSMg01no343_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:38 2005	CHROMAT_FILE: MSMg01no343_l04.g1 PHD_FILE: MSMg01no343_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:38 2005
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(59,523,932 - 59,524,284)	(59,673,451 - 59,673,616)
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATG TGGTAATCCATGGCCCTAGTCTGATATCATCTCTGGGAATGGGCCCGGAG CAGCCGTGAGAAACAGCACAACTGTTGGGCAATGCAGCCTCGTGTCTTAG GAAATGGAAAATTCTGAAAAGGAATGTTCTAGGGGGTTGGAGAGGCAGAC TCATAGAGCTGAGAGTCTCATTTGTGCACTGGTCCCTGCTGGTCCCTGAG ACCACTCTGCCTCCTCCTCCACTCAGAGCCCTGGCAGGGATCCTTGTCTC TTTGAACCAGTGACTGTGAAGTTCCCCACTGCCTGTGACAGTCCTCCACT ACTGCCTGTGACAGTCCTCCTCCCACCCCTGTGAAGATTGCACCGAGTGT TGGGGCTCTTATGACTACCGTCTATTTTTTATGGACATCTTACCTTTGTA TTTCTTTGCTGTCTCTTGAACTGGTACTTCTACTTCGACTTCTTAAGCTT CCCGTATGTTGTTATTTTCCCCATAGTCCTACACTTTGCTCGTTTCTCGT GACTCGGGCTCTTTTCACTTTGATCTTATCCCCTTTCATTATTTTTTCGA TCCTCAATCTCGGGACCTATGATTCCTTTTATGCTTCTGTTTCGTCGATC TCCTCGCTTTTCTTTATTCTATCTTTCTTATCTCCTCGTACATATTCCCG CTCTCCTTCACTCCTCTATCTTACTCCTTTTTTCGTTCCTTCCCCCTTCT CTTGCGCCGCGCTCGCGTTTTACTCTTTAATACTG	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXAGGAAGAATTCTGAGAAAGGAGGTCTCAGTGTG AGGCTACAGTTACGAACTCCTTTTTCCAAGCTGAAACCAGAATATAGATC AACTTTTAAATGCCACAACATTCCTGTGAGCAAGCTGAGATCAATTCAGA GGCTGGTAGTGGAGATATTGAGGAGTGGTGGTGNNNCNNNNNNTNNNNCN NTTNNNNTNTNNTTTCTTTTNNTTTTTTTTTTTTTTTTNTTTTTTTTTTT TTTTTTTNTTTTTTTTTTTTCCTTTTTTTTTCCTTTTTCTTCTCCTTCTT TCCCCTTTCCTCCTCCCGTCCTCCCCCTCTTTTTTTTTTTCCCTTCCTTG TTTTTTTTGGGTCCCTCTTTCCGCTTCGTGTCCTTTGCTGTTCTTGTCTT GTTTTCTCTTTCGCTGTGTGCTCTCGCCCCTCCCGCGGGGTGTGTCGTCC TTTTCTTTCTTCTTTTTTCCCCCGCCCCTCTTGCCCGTTCGTTCGCCATC TGCCACCCAGCCTTTTCTTTGTTTTGCCTGGTTGTCTTCGAGTGTTTCAT CCTTCCTACGCCTCTTCTTTCTGCTCTGCTCGTCCCAACCTACTATTATA TTTTTTGTTGTAGTCGCCGTCGAACGCCCTCCTCTTTTCACTCACCTCTT GAGATGTATTTGTACCTTTTCCCATTTTGCCGCTCGATTATCTGTCTACA CTATTCCAGATGATTGAGTGTCTCTTTAATTTTATTCCACTATTTCCACT ACAATTTATCT
quality values	Open. Hide. 32 37 37 37 37 32 31 16 17 9 9 9 19 22 41 48 48 35 31 31 31 31 33 34 27 20 11 11 12 16 19 28 22 24 14 14 14 24 31 48 57 35 35 35 35 37 42 53 53 50 57 57 44 43 24 29 19 32 23 33 26 37 42 43 57 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 57 57 57 57 57 50 50 50 50 48 50 59 59 48 57 57 57 57 57 57 57 54 54 54 54 57 57 57 57 68 68 68 68 68 57 57 57 57 57 57 57 59 57 57 59 68 68 68 57 57 54 54 57 57 57 59 57 57 57 57 54 57 59 59 59 59 59 57 68 68 50 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 59 57 57 57 57 59 57 57 57 57 57 57 68 57 57 57 57 57 57 57 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 57 57 57 57 57 59 59 59 59 59 59 57 59 59 59 57 39 39 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 59 59 57 57 57 59 59 68 57 57 57 57 57 57 57 52 57 44 43 33 33 43 44 44 43 52 43 50 32 32 16 32 32 50 38 59 59 59 59 59 57 57 57 59 57 57 57 57 57 50 47 47 43 44 43 48 48 48 44 42 42 37 39 39 42 42 44 43 43 59 59 54 54 48 57 57 57 57 57 68 57 44 44 30 37 37 59 57 54 54 48 48 46 46 43 41 41 42 39 36 36 32 34 30 30 17 17 26 29 37 43 43 40 43 43 43 43 43 43 43 39 36 36 37 37 28 28 28 37 28 28 14 14 14 21 26 23 17 17 9 9 9 9 12 16 22 23 19 19 14 16 16 31 31 39 24 24 14 18 18 20 21 22 12 15 15 21 14 17 13 15 8 8 8 10 13 11 11 10 13 19 16 16 11 14 14 18 14 13 12 6 6 8 8 8 8 8 6 6 6 6 8 8 8 8 14 14 10 10 8 8 8 8 8 10 14 10 10 8 8 8 8 10 10 6 6 8 8 8 8 8 8 8 10 10 8 8 6 6 11 11 10 10 10 8 8 8 8 8 8 10 10 10 8 8 8 8 8 8 10 8 8 10 10 10 8 8 10 8 8 8 8 8 7 7 10 8 8 8 8 8 8 8 10 13 10 14 10 8 8 8 8 8 8 8 8 9 9 10 14 14 10 10 10 10 8 10 10 8 10 11 8 8 6 6 8 8 8 8 8 10 8 8 9 9 9 12 10 10 10 8 8 8 12 14 18 16 15 10 8 8 8 8 8 8 8 8 8 8 8 6 6 10 10 12 10 8 8 8 8 8 10 10 10 10 10 8 8 10 8 9 9 9 10 10 11 9 9 9 9 9 9 10 9 8 8 6 6 8 6 6 8 8 8 8 8 8 9 12 20 14 14 15 15 18 13 12 12 9 8 7 7 7 8 8 10 8 8 8 8 8 8 8 10 12 9 8 8 10 8 8 8 8 11 8 8 8 8 8 8 10 9 9 8 8 11 10 11 12 8 8 8 8 13 13 10 10 8 8 10 8 9 9 10 10 8 8 8 10 15 15 21 8 8 8 8 8 8 8 8 8 8 8 8 10 10 10 10 13 14 9 9 9 8 8 8 8 8 8 9 8 8 8 8 7 6 8 8 8 8 10 10 9 9 10 10 9 9 10 9 9 9 9 9 9 9	Open. Hide. 13 17 16 11 11 10 17 16 31 31 37 39 39 39 39 39 37 39 44 59 39 41 41 37 37 28 32 31 33 32 32 30 31 38 42 53 53 53 53 42 42 42 42 42 48 48 59 57 68 68 68 68 47 50 48 48 48 48 48 57 57 50 50 50 50 50 50 50 68 68 68 68 48 50 46 46 46 48 57 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 59 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 68 57 57 57 57 57 57 57 59 59 59 68 68 57 68 68 68 59 57 57 57 57 57 68 68 68 68 68 68 68 68 50 51 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 50 53 50 53 53 53 53 53 57 53 53 50 50 41 41 41 30 30 19 21 3 0 0 0 3 0 0 0 0 0 0 3 0 0 0 0 3 0 0 3 3 0 0 0 0 3 0 3 0 0 3 7 7 10 10 13 9 3 0 0 3 8 8 8 9 9 9 10 13 10 10 8 7 7 8 3 0 3 9 9 9 11 11 11 11 17 10 9 9 9 9 9 11 11 3 0 3 6 6 6 6 9 9 10 10 11 8 9 9 10 8 12 11 13 13 10 7 7 7 8 9 9 10 9 8 8 6 6 6 6 8 8 11 15 13 10 8 8 8 8 9 9 9 8 8 8 8 8 8 12 12 12 11 10 8 8 8 8 8 8 8 8 9 10 8 8 8 10 10 9 8 8 8 8 8 8 10 8 8 8 8 9 10 15 15 16 11 10 10 12 12 13 13 13 26 10 9 9 9 9 10 13 24 23 22 16 16 10 10 8 8 9 12 9 11 11 8 10 8 8 8 8 8 10 8 8 6 6 8 8 11 13 13 11 12 12 12 10 7 6 8 8 9 9 10 13 10 10 12 10 8 8 8 8 8 8 8 8 8 8 8 8 10 10 10 8 10 12 12 13 10 8 8 8 8 8 8 8 8 8 8 10 9 10 9 9 9 9 10 12 12 11 10 8 8 8 8 8 10 13 16 20 23 18 18 12 12 12 11 11 10 10 9 10 8 12 12 12 12 8 10 10 10 8 10 8 10 6 6 8 6 6 8 8 8 8 8 8 6 6 8 10 15 8 8 8 8 6 6 6 6 8 8 9 9 8 11 8 8 9 8 8 6 6 8 8 8 8 10 8 8 8 8 8 10 10 8 8 8 8 8 10 10 8 8 8 8 8 8 8 8 10 10 8 8 6 6 8 8 10 10 8 8 8 8 9 10 8 8 8 8 8 10 10 10 10 9 10 8 6 6 8 8 12 11 11 11 11 10 9 9 9 9 9 9 9 9 9 9 10 10 11 9 10 10 10 9 10 9 9 8 8 8 8 6 8 8 7 8 8 8 8 8 9 9 10 8 8 8 8 8 10 11 14 14 12 12 9 9 10 10 11 10 10 10 10 8 8 8 8 8 8 10 10 10 10 16 11 10 12 10 8 8 8 10 8 8 11 8 8 8 8 8 8 9 9 9 8 8 6 6 6 6 6 6 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 8 8 10 8 9 8 8 8 8 8 8 8 8 8 8 8 8 10 15 15 10 10 11 16 12 12 6 6 7 7 10 10 10 12 15 14 10 16 11 11 11 13 12 8 8 8 8 8 8 8 8 6 6 11 7 8 8 8 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no343_l04.b1 MSMg01no343_l04.b1 CHROMAT_FILE:
MSMg01no343_l04.b1 PHD_FILE: MSMg01no343_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:38 2005
         (357 letters)



>mm_chr15_59523728_59524484
          Length = 757

 Score =  667 bits (345), Expect = 0.0
 Identities = 351/353 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgtggtaatccatggccctagtctgatatcatctctgggaatgggcccggagc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgtggtaatccatggccctagtctgatatcatctctgggaatgggcccggagc 264

                                                                       
Query: 65  agccgtgagaaacagcacaactgttgggcaatgcagcctcgtgtcttaggaaatggaaaa 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 agccgtgagaaacagcacaactgttgggcaatgcagcctcatgtcttaggaaatggaaaa 324

                                                                       
Query: 125 ttctgaaaaggaatgttctagggggttggagaggcagactcatagagctgagagtctcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctgaaaaggaatgttctagggggttggagaggcagactcatagagctgagagtctcat 384

                                                                       
Query: 185 ttgtgcactggtccctgctggtccctgagaccactctgcctcctcctccactcagagccc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgtgcactggtccctgctggtccctgagaccactctgcctcctcctccactcagagccc 444

                                                                       
Query: 245 tggcagggatccttgtctctttgaaccagtgactgtgaagttccccactgcctgtgacag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tggcagggatccttgtctctttgaaccagtgactgtgaagttccccactgcctgtgacag 504

                                                                
Query: 305 tcctccactactgcctgtgacagtcctcctcccacccctgtgaagattgcacc 357
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tcctccaccactgcctgtgacagtcctcctcccacccctgtgaagattgcacc 557


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no343_l04.g1 MSMg01no343_l04.g1 CHROMAT_FILE:
MSMg01no343_l04.g1 PHD_FILE: MSMg01no343_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:38 2005
         (168 letters)



>mm_chr15_59673251_59673818
          Length = 568

 Score =  313 bits (162), Expect = 3e-90
 Identities = 165/166 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaagaattctgagaaaggaggtctcagtgtgaggctacagttacgaactcctttttcc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aggaagaattctgaaaaaggaggtctcagtgtgaggctacagttacgaactcctttttcc 307

                                                                       
Query: 61  aagctgaaaccagaatatagatcaacttttaaatgccacaacattcctgtgagcaagctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aagctgaaaccagaatatagatcaacttttaaatgccacaacattcctgtgagcaagctg 247

                                                         
Query: 121 agatcaattcagaggctggtagtggagatattgaggagtggtggtg 166
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 agatcaattcagaggctggtagtggagatattgaggagtggtggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 568
Length adjustment: 8
Effective length of query: 160
Effective length of database: 560
Effective search space:    89600
Effective search space used:    89600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information