BAC Information

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BAC

Clone NameMSMg01-345H22
Chromosome15 (Build37)
Map Location 86,517,819 - 86,666,491
singlet/doubletdoublet
Overlap genenone
Upstream genePpara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523, Cerk, LOC100042300, Tbc1d22a
Downstream geneLOC100042309, AW049604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345H22.T7 (MSMg01no345_h22.b1)MSMg01-345H22.TJ (MSMg01no345_h22.g1)
ACCAG458305AG458306
length773832
length of high quality
(start - end)		447 (79 - 525)300 (85 - 384)
definitionCHROMAT_FILE: MSMg01no345_h22.b1 PHD_FILE: MSMg01no345_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:57 2005CHROMAT_FILE: MSMg01no345_h22.g1 PHD_FILE: MSMg01no345_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,666,045 - 86,666,491)(86,517,819 - 86,518,116)
sequence
NNGGGGGGGGTTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTTTTCAAGTTAGCGGTGCAGTCTGTATTTTCCCCC
TAGCTATTACTATAGCACCCAAAGCAGGCCCATGCCAAATGACAGAGAGA
AAACTACAACAAATAGCCATTATTATGCTGAATGGTGGGCACGATAGCAC
CACATCTGGATGCCTGTCAGTGTTTCTTACAGTTTGAGGGAATTTTCACT
TCTGGCTCAGCTACTTGGCACAAGTTAAATGCTAACACTCAAGATGAAAT
GCACACGAGAAGCACAAAAAAAATCGCCATACATCATGAGGCAAAAGCAC
CCTGGTGGGTACGCAGCAGCCAATGAGCTTTCCTGGGGATGACAGGCGCA
TGCTAACAAGTGCTCATTTGTCACCGTCATCACCATCATTATCATCTCTA
TCATCACCATCATCATCGCCATCACCATCATCATCCACATCCTCCCAACT
ATGGAGATGATCAGCATACCTCAGTATTCTCTCTTTAACCACTGACACAG
CAGCAGCTAAAAATCACTTCTGTGCTTGCTGGGTTTTACCCACCGGTCCT
CCCCACGAACGTACCCCAATAAGCTCTGGATACTTCTTTCTCCGAAAACT
ATAAACTTTAGAATTATTTTTTATTATAGGGCCAACCCCAAAAATTTGTG
ATGGCCCGGCCCCCTCCCGCTTAAACACCCCCTTTCCTTAAGAGAAAAAC
CCTCCCTCCCGACCCAAAAAAAG

NCCCATTTTCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGTCTTACGTGTTC
CTTCAGGAGCTCAGTCAGAGCGGAGGCAGGTGATTGAGGAGGAACATGTG
CCCAGGGTGTGGGCCTGCAGGTTTCCCACAGCTGGGAGGTCTGTTCAGGA
TGGGAGCAGGATGATCACTTCTGGGTGCTCAGGTAGGAAATGGGGGAGGG
GCATGGATGGTGACAGCGAAGCACCGGAAGCAGAGTCACAGTTTCCTTCA
GAGTGTGGGACTTCCTAGTACTGGCTGTAGGCTCAGTGCCACCGACCAGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTCTTTTTTTNNTTTCG
TGTTGTTTTTGTGTTTTGTCTGTTTTGTGTCTCTTTNNCNNTCTTTTGCT
TTCGTTCCTTGCCCGGGTTTTCTGCTTGTCTCTCCCCTCTTTTCTTGTTC
TCCTCCTTTCTCTCTTTCTTTTCTTTCGCCTTCCTTTCCTTTTTCTCTCT
GTTTTTTTCTTCTTTCCCCTCTCTTTCTCCTCCTCTCTCTTTTCTCCCTT
CTTTTTTTTCTGCTCTCTTTCTTTCTCTCTCTTTCTTTTCCTCTTTTTCC
CTTTTCCTCTGTGCTTCTTTTTTCCTCCTTTTCTTTTTGGTCCGCCTTTT
TTCTGTTTGCTCTTCTTTCCCTCGGTTCGTCTTCTCCGTGTGTTCTTGTT
CTCTCTTTCCCTTTTCTTGTCTCTTTCGTTTCTTCTTATCTTTCTTTCTT
CCCCCTATCTTCTTTCTTCTCACTGTCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_h22.b1 MSMg01no345_h22.b1 CHROMAT_FILE:
MSMg01no345_h22.b1 PHD_FILE: MSMg01no345_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:57 2005
         (447 letters)



>mm_chr15_86665950_86666796
          Length = 847

 Score =  795 bits (411), Expect = 0.0
 Identities = 438/447 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtgcagtctgtattttccccctagctattactatagcacccaaagcaggcccatgccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ggtgcagtctgtattttccccctagctattactatagcacccaaagcaggcccatgccaa 483

                                                                       
Query: 61  atgacagagagaaaactacaacaaatagccattattatgctgaatggtgggcacgatagc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 482 atgacagagagaaaactacaacaaatagccattattatgctgaatggtgggcacgataac 423

                                                                       
Query: 121 accacatctggatgcctgtcagtgtttcttacagtttgagggaattttcacttctggctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 accacatctggatgcctgtcagtgtttcttacagtttgagggaattttcacttctggctc 363

                                                                       
Query: 181 agctacttggcacaagttaaatgctaacactcaagatgaaatgcacacgagaagcacaaa 240
           |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 362 agctacttggcaaaagttaaatgctaacactcaagatgaaaagcacacgagaagcacaaa 303

                                                                       
Query: 241 aaaaatcgccatacatcatgaggcaaaagcaccctggtgggtacgcagcagccaatgagc 300
           |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 302 aaaaatcgccttacatcatgaggcaaaagcaccctggtgggtacgcggcagccaatgagc 243

                                                                       
Query: 301 tttcctggggatgacaggcgcatgctaacaagtgctcatttgtcaccgtcatcaccatca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tttcctggggatgacaggcgcatgctaacaagtgctcatttgtcaccgtcatcaccatca 183

                                                                       
Query: 361 ttatcatctctatcatcaccatcatcatcgccatcaccatcatcatccacatcctcccaa 420
           |||||||||||||||||||||||||||||  |||| |||||||||||||||||||| |||
Sbjct: 182 ttatcatctctatcatcaccatcatcatcatcatcgccatcatcatccacatcctctcaa 123

                                      
Query: 421 ctatggagatgatcagcatacctcagt 447
           |||||||||||||||||||||||||||
Sbjct: 122 ctatggagatgatcagcatacctcagt 96


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no345_h22.g1 MSMg01no345_h22.g1 CHROMAT_FILE:
MSMg01no345_h22.g1 PHD_FILE: MSMg01no345_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:57 2005
         (300 letters)



>mm_chr15_86517619_86518318
          Length = 700

 Score =  561 bits (290), Expect = e-164
 Identities = 296/298 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagtcttacgtgttccttcaggagctcagtcagagcggaggcaggtgattgaggaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtcttacgtgttccttcaggagctcagtcagagcggaggcaggtgattgaggaggaa 260

                                                                       
Query: 61  catgtgcccagggtgtgggcctgcaggtttcccacagctgggaggtctgttcaggatggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtgcccagggtgtgggcctgcaggtttcccacagctgggaggtctgttcaggatggg 320

                                                                       
Query: 121 agcaggatgatcacttctgggtgctcaggtaggaaatgggggaggggcatggatggtgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 agcaggatgatcacttctgggtgctcaggtaggaaatgggggaggggcatggaaggtgac 380

                                                                       
Query: 181 agcgaagcaccggaagcagagtcacagtttccttcagagtgtgggacttcctagtactgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcgaagcaccggaagcagagtcacagtttccttcagagtgtgggacttcctagtactgg 440

                                                                     
Query: 241 ctgtaggctcagtgccaccgaccagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 ctgtaggctcagtgccaccgaccagtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgt 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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