BAC Information

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BAC

Clone NameMSMg01-346E13
Chromosome15 (Build37)
Map Location 81,242,909 - 81,279,473
singlet/doubletdoublet
Overlap geneXpnpep3
Upstream geneEnthd1, Grap2, AW544981, Tnrc6b, Adsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1, Slc25a17, St13, Dnajb7
Downstream geneRbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346E13.T7 (MSMg01no346_e13.b1)MSMg01-346E13.TJ (MSMg01no346_e13.g1)
ACCAG458907AG458908
length738744
length of high quality
(start - end)
345 (221 - 565)487 (98 - 584)
definitionCHROMAT_FILE: MSMg01no346_e13.b1 PHD_FILE: MSMg01no346_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:56 2005CHROMAT_FILE: MSMg01no346_e13.g1 PHD_FILE: MSMg01no346_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,279,129 - 81,279,473)(81,242,909 - 81,243,395)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAACT
CTTCGTCTGTGGAGATAGGAGGATCAAGAATCCAGAGCCATCCTCAGCTG
CTGAGTTCAAGGCAAGCCTGGGTTACACGACAACTTGTCCCCACCATAAA
TGCAATAAAAAAGACATACATCTCTCCTGGGAAGCCTACTCTACCCATGT
CAAGTTGTAGAGTAGGCAAGACTCTGTGTTTACTGGTATGGATAGTTCTG
TTAATTAAAAATTTGTTGGCTTGGTTCAGGGAATTTATAACTTCTTTTCT
TTGGCAATAGGAGTCCTGGAAGCGTAAATTTGGAAATGGAGGCTGCCTAA
TGCTTGTGTGGCTCACGGTCTGCAACTATAATGGATGTCATACATTTAGG
TGTAGACAAAACTGGGCGTTTTGTAAAGTTTCAATAGTGTAACTGAGCCA
ATAAACAGACTCCCTTCTGACCTCCAGAACCCCAGCAAAGGATTAGGAGT
TAACCCTCTCTCCTTGTTTGTGTTCTTCCCACTCTCTGCCTGTATAGACT
TAATCTTGTGTCTGAGTACTGCACTGGCTCTCTAGCAGGCAATGACTCAG
AATGTGTTGCCATCTTCTGGTTAAAAGAAATACTGACTCCCTTTGTTTTT
ATCCAATCCCTGTTAAACCTACATCCACTTTTACAAAGAATTAGCTTTTT
TCCTAGTTGGTTATATACCTACCTATTATGTTTTTGTT
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGAGTTAGCAAGTCTCTGTCTGAAAATGCAGTG
AAATGCAACTGAAGTAGAGACACTTGTTGTAAACCTCTAGCTCCCATGCA
TGCGTGCACACTTGCATGCACATACGTACTCACAAACTCTCAAACACCAC
ACACAACTCCTATCAAATACGTGCCATCAAGAATGCTTCATAGGCCCTAA
AGAAATCTTCATCTTGACCTGACTTACGATACTCTACTTTTGAACTGAAT
ATACGTCGAAGACTTTACAATCAGTACTTATTGTGTCAAGATTAAATGAG
ATCTGCATTGAATCTGGATGGAAGAATAAGTCCAAAGATTTTTAATTTAA
TCCTAAATTTGAATCTCATTTTGTCCAATGCTATATGACCTTAAACAAAT
TGTTTCTCAATCTCTGGTCCTGATAACTCATTTATTTGGGGGTTTTTGAG
ACAGGGTCTCACTGTGTAGCCATGGCTGTCATAGACCTCACTATGTAGAC
CAGTCAGGCCTTGAACTTACAGAGATCCACTAAGCCATACAAGACTTTTT
AAGTCTGCTAGCAGAGTAACCTAGTGTTGCACTGTATGTTCTCACGTGTT
CTCTCTGCCTCCTGCTGCTTCCCTACAATCAAGAAAACAAGTGCCTGCCT
CTAAGTATGAATTTTTTCAACCACTTTAGGTTTAACCTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_e13.b1 MSMg01no346_e13.b1 CHROMAT_FILE:
MSMg01no346_e13.b1 PHD_FILE: MSMg01no346_e13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:56 2005
         (345 letters)



>mm_chr15_81278929_81279673
          Length = 745

 Score =  629 bits (325), Expect = 0.0
 Identities = 340/345 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtgtttactggtatggatagttctgttaattaaaaatttgttggcttggttcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 actctgtgtttactggtatggatagttctgttaattaaaaatttgttggcttggttcagg 486

                                                                       
Query: 61  gaatttataacttcttttctttggcaataggagtcctggaagcgtaaatttggaaatgga 120
           |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 485 gaatttataacttcttttctttggtaataggagtcctggaagtgtaaatttggaaatgga 426

                                                                       
Query: 121 ggctgcctaatgcttgtgtggctcacggtctgcaactataatggatgtcatacatttagg 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 425 ggctgcctaatgcttgtgtggctcagggtctgcaactataatggatgtcatacatttagg 366

                                                                       
Query: 181 tgtagacaaaactgggcgttttgtaaagtttcaatagtgtaactgagccaataaacagac 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 365 tgtagacaaaactgggcgttttgtaaagtttcaatagtgtaactgagccaataaacagcc 306

                                                                       
Query: 241 tcccttctgacctccagaaccccagcaaaggattaggagttaaccctctctccttgtttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tcccttctgacctccagaaccccagcaaaggattaggagttaaccctctctccttgtttg 246

                                                        
Query: 301 tgttcttcccactctctgcctgtatagacttaatcttgtgtctga 345
           ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 245 tgttcttcccactctctgcctgtatagacttcatcttgtgtctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no346_e13.g1 MSMg01no346_e13.g1 CHROMAT_FILE:
MSMg01no346_e13.g1 PHD_FILE: MSMg01no346_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:56 2005
         (487 letters)



>mm_chr15_81242709_81243595
          Length = 887

 Score =  926 bits (479), Expect = 0.0
 Identities = 485/487 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgaaatgcaactgaagtagagacacttgttgtaaacctctagctcccatgcatgcgtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgaaatgcaactgaagtagagacacttgttgtaaacctctagctcccatgcatgcgtgc 260

                                                                       
Query: 61  acacttgcatgcacatacgtactcacaaactctcaaacaccacacacaactcctatcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacttgcatgcacatacgtactcacaaactctcaaacaccacacacaactcctatcaaa 320

                                                                       
Query: 121 tacgtgccatcaagaatgcttcataggccctaaagaaatcttcatcttgacctgacttac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacgtgccatcaagaatgcttcataggccctaaagaaatcttcatcttgacctgacttac 380

                                                                       
Query: 181 gatactctacttttgaactgaatatacgtcgaagactttacaatcagtacttattgtgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatactctacttttgaactgaatatacgtcgaagactttacaatcagtacttattgtgtc 440

                                                                       
Query: 241 aagattaaatgagatctgcattgaatctggatggaagaataagtccaaagatttttaatt 300
           | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 aggattaaatgagatctgcattgaatctggatggacgaataagtccaaagatttttaatt 500

                                                                       
Query: 301 taatcctaaatttgaatctcattttgtccaatgctatatgaccttaaacaaattgtttct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taatcctaaatttgaatctcattttgtccaatgctatatgaccttaaacaaattgtttct 560

                                                                       
Query: 361 caatctctggtcctgataactcatttatttgggggtttttgagacagggtctcactgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caatctctggtcctgataactcatttatttgggggtttttgagacagggtctcactgtgt 620

                                                                       
Query: 421 agccatggctgtcatagacctcactatgtagaccagtcaggccttgaacttacagagatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agccatggctgtcatagacctcactatgtagaccagtcaggccttgaacttacagagatc 680

                  
Query: 481 cactaag 487
           |||||||
Sbjct: 681 cactaag 687


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)